Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01917 atgaaacacgTAATATTAAATTCTACAATATTATGCCATAGTCCTTATGGTATTACTCACAAGAGTATTTGGGAGTTAGGCAACCCTCTTACTTCCCCAACTCCTCTTCTCCTTCTGCAGATCTCTATGATTACCGTAGTCATACAGTTTTTCGATGCTTGTCTCAGACCATTAGGACAAACCTCCCTTGTATCACAGATTCTTGGAGGATTGGTATTTGGTCCATCAGTTTTGGGGCACAAAAAGATGATTACAAGTATTTTATTCCCAATGAAAGGTGCTATAATACTTAAAACAATGGCAACTTTCTGCCTCAATTTCTTCTACTTCATATGTTGTGTAAAGATGGATACAGTCACAATGctgaaaacagaaaaacaagcCATCACAATCGGTATTTCTGTATTCGCATTAACATTAGGAGTCCCTCTTGGATTAGCATTTGCATTGATGAAATATGTAGCCATGGACAAAACCCTCTCGGACGCTCTCCCAGTAATAGCTGTTTCGCAAAGCTTAACCGTAttcatcagcatatcagtcctTCTAGCAGAGCTTAAAATCCTTAACACGGACGTTGGACGTCTAACCTTATCGTCAGCAATGTTTGCTGATGTTGTTAGCTTCTCTATGTCAGTAATTATGTTTGCAGCATTGCAGACTAAATCCGGTAATAGTAACATCACAACAATAGTATGGATCATGCTATCCATAATTgcactttttattattatcatatatgTAATGCGGCCAGTTATACTATGGTCTGTAGCCCGATTACATGGAAAGCCTATCGATGAAGTTTGCATCCTTTGTGTCATTGTATGTGTTCTCCTCACTGCATTTATCAGTGAAGTCATTGGACAGCATTTTGCAATGGGACCAATTCTTTTAGGCTTGGTTGTTCCTGAAGGGCCGCCTTTAGGAACGAATTTGATAGCGAAAATGGAGACGGTTACTTGTGGTTTTTTGTATCCAATCTATCTTGCTGTCAGTGGATTGCAGACTGATGTCTTCAAAATCAACATTAAGTCTACGTGGATTGTTACTATCATAGTTATAGCCGGTTTCGTGGTGAAAATCGGTGGTGTTATGTTGCCGGGTTATTATTACAATGTCCCCATGAAAGAATGTTTTATTATTGGGCTCCTTCTTAATGGAAGAGGTATTGCTGAGCTCACCATGTACAATATATGGAAGGAAGGCAAGATACTAACAGAACAAGAGTTTGCTTTGATGGTGGTGTCCCTtctagtggtaaatgctatcatAGCACCACTGATAAACTTCTTATTTGATCCTTCAGCCCAATACCATTCAGGAAAAAGATGTTCAATACAACATACAAAGCGAGACTCCGAGCTCCGAATCATGGCATGCATTTACAAAGATGAAAACATCCCAACAATGCTCAATGTCATAGAAGCGTCATGTGCAAGCAAAGAGAGCAATGTTGCAGTTATAGCACTTCTCCTTGTAGAGATTCTGGGAAGATCAAGGCCTATTCTCGTTGCTCACCAACAGCACGAAACGCTTCGGTCGACCAAATGCCATTCAACTCGGCTCGACAATGCATTGAAACAATATGAACAGCTAAATGAAGGGTGTGCATATATTCAATCATTCACCTCAATCTCCGACTTCGAAACAATCCACGATGACGCTTGTAAAATAGCACTCGACAGAAGAGCCAACATTTTGATAATGCCATTTCACAAAAGGTGGGAGATAGATGGATCAGTTGAGGTAAACAATAGAGCAATCCAAGCAATAAACATTAAAGTCCTCGATAGAGCGCCTTGTTCGGTCGGAATCCTTATCGACCGAGGCATCTTAAGCGGTTCTCCGTCACTTTTAATATCTAATAAATCAATATACTATGTTGCTGTGCTGTTCATAGGAGGTGCAGATGATGCTGAAGCACTAGCCTATGGTAGTAGAATGGCTAGACATGAATGTGTGAGTGTATCCGTAGTTCGATTCCTTGTTTTCGGAGAAGAGAATTCAAAAGATAGAAAACGTGACAGCGATCTTGTAGATGAATATAGATACTATAATGTTGGAAATGTAAGGTTTGAGATAACTGAAGAAGTTGTGAAAGATGGAATAGAATTTTCTTCTAGTATAAGAAGAATGATAGATTATTTTGATTTAGTTATTGTTGGGAGGGGACATCCACAATCGGTTTTGTTACGCGGACACGACCAATGGAGTGAGTGTCCTGAGTTAGGTGTGATAGGTGATATGTTGGCTTCACAGGATTTTATGACAAAGGCATCTGTGTTGGTTGTTCAACAACAGAGAATGGGAGGGAGATTGGTTAAACATAATATTAATACATTGCCAACTCAAAGAGATTCTAATGCAGTTTCAATGGATGAAGCACCAAGAACTTCTTGTAGTATTTCTGTggataaatatgataaaatgtAG 2433 0.3777 MKHVILNSTILCHSPYGITHKSIWELGNPLTSPTPLLLLQISMITVVIQFFDACLRPLGQTSLVSQILGGLVFGPSVLGHKKMITSILFPMKGAIILKTMATFCLNFFYFICCVKMDTVTMLKTEKQAITIGISVFALTLGVPLGLAFALMKYVAMDKTLSDALPVIAVSQSLTVFISISVLLAELKILNTDVGRLTLSSAMFADVVSFSMSVIMFAALQTKSGNSNITTIVWIMLSIIALFIIIIYVMRPVILWSVARLHGKPIDEVCILCVIVCVLLTAFISEVIGQHFAMGPILLGLVVPEGPPLGTNLIAKMETVTCGFLYPIYLAVSGLQTDVFKINIKSTWIVTIIVIAGFVVKIGGVMLPGYYYNVPMKECFIIGLLLNGRGIAELTMYNIWKEGKILTEQEFALMVVSLLVVNAIIAPLINFLFDPSAQYHSGKRCSIQHTKRDSELRIMACIYKDENIPTMLNVIEASCASKESNVAVIALLLVEILGRSRPILVAHQQHETLRSTKCHSTRLDNALKQYEQLNEGCAYIQSFTSISDFETIHDDACKIALDRRANILIMPFHKRWEIDGSVEVNNRAIQAINIKVLDRAPCSVGILIDRGILSGSPSLLISNKSIYYVAVLFIGGADDAEALAYGSRMARHECVSVSVVRFLVFGEENSKDRKRDSDLVDEYRYYNVGNVRFEITEEVVKDGIEFSSSIRRMIDYFDLVIVGRGHPQSVLLRGHDQWSECPELGVIGDMLASQDFMTKASVLVVQQQRMGGRLVKHNINTLPTQRDSNAVSMDEAPRTSCSISVDKYDKM 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01917 810 PRINTS Rhesus blood group protein signature 33 51 IPR002229 GO:0005887
Tsu03g01917 810 PRINTS Rhesus blood group protein signature 131 148 IPR002229 GO:0005887
Tsu03g01917 810 PRINTS Rhesus blood group protein signature 349 367 IPR002229 GO:0005887
Tsu03g01917 810 PRINTS Rhesus blood group protein signature 167 183 IPR002229 GO:0005887
Tsu03g01917 810 Gene3D - 36 439 IPR038770 -
Tsu03g01917 810 PANTHER CATION/H + ANTIPORTER 7 779 - -
Tsu03g01917 810 PANTHER CATION/H(+) ANTIPORTER 15-LIKE 7 779 - -
Tsu03g01917 810 Pfam Sodium/hydrogen exchanger family 46 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01917 Tsu-Chr3 19887998 19891261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01917 7 766 Antiporter Super Family AT2G13620 36.410 5.37e-166 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01917 - - gmx:100779700 1019.61