Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01909 ATGGCGCCTAGAAAAAGAAATTTGCATCAATGGAAGCATCCATTCAATGATGATTATCCATTTGAAGCAGTATTGAATGGCTCATGGCAACCAgtagaacttataaaaattgagtCCGGAAAAACTACCTTGCATTTCATGGATTCTCAACAAATTCAGAGCCCTTTATCATCAGATATTCGtataaaatcaagaaaagcTACTTCATCCGACTGCTCTAACTTTTTAAGACCTGGAATTGACATATCAATGCTATTGGGGTATTGCTACAAAGATAATCCAGATCAATTTGGTCCTATTTCCATATGGATGGATGCAAGAATAAATTCTATACATAGACAACCTCACGAATCTGATCAATGTTCGTgccaattttttataaacttcTATGATGATCAAGGTTCACTTGGTACAGAGTTAAAAGCTCTTGATAAAAAGGTTAATGCAATTGGAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGACGGCTTGTTAAAAAAGAATGACGGTTTTGAAGTTAAGCCTTATAGATGGGATTCATCTGAAGATTGTTCTTCACTATCACAATCTAGATTACTCTTCGGGAAATTTTTAGCCGATCTTTCGTGGTTTGTTACTACATCATTTTTAAAGAAGGTCTCATTTCGGATAAGGTCTGCTCAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACTGATATTGTTAGTCATTTTCTTATAGATGTTGTGAACTTCAAATCAAAAGAGGGATCATTAGTACCACttgtttttgaatttgatttgtttCATGATTATGATGGTAAAGAAGATGAAGCGTCACTAGTTGTGTCTAATGAAATGGAAAACTTACGACGTTCGAGACGTAGGACCGTACAACCCAAACGTTATGTTGGTTGTGATGTTGAGAAGTTGGAGGTTGGAAATTTTCGAACGTGGCCGTACAAGAGACCAACTTATGTGACAGATGATGAAAACTCTTCTTCAGATTCGGAAGAGGATGATGGCAAGAGTGATGAAAACTCTTCCAAAAATTATCATTTGAATACAAATGATGCCGATGAGTTGAATTTGGACCCGTTCAGTATTCCGACTACCATGTCAAATGACGTAGAAGTTGATGATAGAGTTTCTTTGGGGGATTTTTATAGTTTCGGCAAAGAGAAGCTTAAGAGGAAGCGATTTCATGATTCAGATGATATGGATTTTGAAGGAAAATGGGAAGGGATACATTTCAAAAAAGGAGCTCAAACAAAAAGATATTATTCCATTTTTACAGGCAAAGAATATGTTCATGAAGAACAAGATCATAAAGGCGGAAGATCGTTAAATGTTGATGCCGGCAAGGAAATGATAGATACTTACATGAAGAATTTTAATAATCTACCAACTGAAGAAGAGTCAATTATTAATGAAGAGACAAGCAAGTTGGAGCAGAAGGTTGAAGAAAATGTATCgaaaatggaggatgaagaagaaaatccTGATGATTTGGCTGGCTTGTGGGAAGAAATGGATACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCAAATGCCGAGGTTTTAGCTGATTCCAAGAAAGAATCCACAGAGATTTGTGAACATGATTATAAATTGGATGAAGAAATTGGAATATACTGCCTTCGATGCGGCTTTGTGAAAACTGAGATACGACACATTTCTGAACACGTTATGAAAAGTCCAAGACGGTACAGAGAGGAGAAACAATGCATTGAAGAAGATAGGGAACATAAATCAGAGCAAAAAGTTGACGAAGAtgttaataatgatttgttctCAACTCATGCTACTGATCCTGATGAACCAATATCTACCGAAAATGacagtgtttgggaattgatTCCAGAACTGAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGaaagaaaaatccaaaacaaatggTGGTTGTGTTATATCTCATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACGCTCTACACATGGCGCAAAGAGTTCAAAAAATGGAAGGTTCCTATACCGGTGTATCTTATCCACGGCCGTAAAACTTGGAAAGGTTTGACGACACCAAAATCAACGGTTCTTCCTGGAGTTCCAAGACCTTCTAGTGACGTCAAACATGTTTTAGATTGTCTTAGCAAGATCCAAAAATGGAATTCCCACCCTAGTGTTCTTGTCATGGGTTATACTTCATTTTTAACATTAATGAGATCAGAAGATACAAAATTTGCACACAGAAGATACATGGTTAAAGCATTGAAAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGaggaaatgtttgatgaaactTCCAACAGAATTGAGAATATTACTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTAGACCAAAATTTGTCCACGAAGTTCTACAAGAGTTAGATTCTAAATATCGAAGGAGAGGAAAGGTAGCGAAGAAAGCACGGCATTTGCTCGAGGCACGGGCGAGGAAATTCTTCTTGGACAacattgaaaagaaaattaactCAGACTTTGATGAGTATAAGATGCAGGGTCTAAAtgtgctaaaaaaaattacttctGGTTTTATCGATGTTTATGACAGTGGAAATTCTTCTGATACTCTTCCTGGTTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCCGAGTGCACGGGTTACCCTCTTGAGGTTGAGCTTTTGATAACACTCGCATCGATACATCCATGGTTGATCAAAACAGCAGCAGCATGTGCAGCTAAGTTTTTCGCTGAGGAAGAATTGGAGAAACTAGAATCATCAAAGTTTGATTTGAGAAAAGGTTCCAAAGTGAGATTTGTTCTGAGCCTAGTTTCACGTGTAGTGAAAAAGGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCAGTGAGGTTTTTTATAGAGTTATTTGAAAAGTATTTTCAGTGGCaaaatggtaaagagatttTGATACTAACTGGTGAACTAGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATCCTCGTGGCAGTTCGAAGATACTTCTTGCTTCAATAAATGCTTGTGCTGAAGGGATTAGTTTAACAGCAGCTTCTAGAGTGATTTTTTTGGATTCGGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGTCCAGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACGACCGGGTCAATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAGTGGGTTTCTTGCATGATTTTCAGTGAGGAATTTGTGGAAGATCCTTCTAAATGGCAAGCTGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAGGATTCAACAAGTTAA 3663 0.3494 MAPRKRNLHQWKHPFNDDYPFEAVLNGSWQPVELIKIESGKTTLHFMDSQQIQSPLSSDIRIKSRKATSSDCSNFLRPGIDISMLLGYCYKDNPDQFGPISIWMDARINSIHRQPHESDQCSCQFFINFYDDQGSLGTELKALDKKVNAIGIDQIFILQRLQHNTCDGLLKKNDGFEVKPYRWDSSEDCSSLSQSRLLFGKFLADLSWFVTTSFLKKVSFRIRSAQNKIVYQVKGNDTDIVSHFLIDVVNFKSKEGSLVPLVFEFDLFHDYDGKEDEASLVVSNEMENLRRSRRRTVQPKRYVGCDVEKLEVGNFRTWPYKRPTYVTDDENSSSDSEEDDGKSDENSSKNYHLNTNDADELNLDPFSIPTTMSNDVEVDDRVSLGDFYSFGKEKLKRKRFHDSDDMDFEGKWEGIHFKKGAQTKRYYSIFTGKEYVHEEQDHKGGRSLNVDAGKEMIDTYMKNFNNLPTEEESIINEETSKLEQKVEENVSKMEDEEENPDDLAGLWEEMDTALISSNLLDGTEGSNAEVLADSKKESTEICEHDYKLDEEIGIYCLRCGFVKTEIRHISEHVMKSPRRYREEKQCIEEDREHKSEQKVDEDVNNDLFSTHATDPDEPISTENDSVWELIPELKEKMHAHQKKAFEFLWQNIAGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKVPIPVYLIHGRKTWKGLTTPKSTVLPGVPRPSSDVKHVLDCLSKIQKWNSHPSVLVMGYTSFLTLMRSEDTKFAHRRYMVKALKESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRRGKVAKKARHLLEARARKFFLDNIEKKINSDFDEYKMQGLNVLKKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMAECTGYPLEVELLITLASIHPWLIKTAAACAAKFFAEEELEKLESSKFDLRKGSKVRFVLSLVSRVVKKEKVLIFCHNLAPVRFFIELFEKYFQWQNGKEILILTGELDLFERGKVIDKFEDPRGSSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWVSCMIFSEEFVEDPSKWQAEKIEDNILREMVEEDKSKAIHMIMKNEKDSTS 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01909 1220 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 662 863 IPR014001 -
Tsu03g01909 1220 SMART helicmild6 1055 1140 IPR001650 -
Tsu03g01909 1220 MobiDBLite consensus disorder prediction 326 365 - -
Tsu03g01909 1220 Gene3D - 608 906 IPR038718 -
Tsu03g01909 1220 MobiDBLite consensus disorder prediction 348 365 - -
Tsu03g01909 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 939 1205 IPR027417 -
Tsu03g01909 1220 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1026 1192 IPR001650 -
Tsu03g01909 1220 CDD SF2_C_SNF 1022 1151 - -
Tsu03g01909 1220 SMART ultradead3 633 871 IPR014001 -
Tsu03g01909 1220 Pfam Helicase conserved C-terminal domain 1023 1139 IPR001650 -
Tsu03g01909 1220 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1219 - -
Tsu03g01909 1220 Pfam SNF2-related domain 642 908 IPR000330 GO:0005524|GO:0140658
Tsu03g01909 1220 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1219 IPR044567 GO:0080188
Tsu03g01909 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 865 IPR027417 -
Tsu03g01909 1220 Gene3D - 83 147 - -
Tsu03g01909 1220 Gene3D - 942 1220 IPR027417 -
Tsu03g01909 1220 Coils Coil 476 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01909 Tsu-Chr3 19775252 19781190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01909 1066 1158 RAD5 or RAD16-like Gene Family AT5G05130 40.426 6.08e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu03g01909 SNF2_N 7.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01909 K10875 - jre:108991882 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01909 03 19775252 19781190 Tsu03g01909 03 19775252 19781190 ECH