Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01908 ATGGTGCCTGGAAAAAGGAATTGGCATCAACAAAAGCATCCATTTGATGATGATTACCCATTTGAAGCAGTATTGAATGGCTCATGGCAACCGGTAGAACTCATAAAAGTTGAGTCCGGAAAAACTTCGATACAGTTCATGGATACTGAACAGTTTCAGAGCCCTTTATCATCGAATATTCGAATCAAATCAAGAAAAGCTACTGCATATGATTGCACAAGCTTTTTAAGACCTGGAATTGACATAACAATGCTATTGGGATATTGTCACCATGATAATCCAAATCAATTTGGTCCTATTCCAATGTGGATGGATGCAAGAATAAACTCTATTCAAAGACAACCTCACGAATATGACCAGTGTTCGTGTCAATTTTACGTAAACTTGTATGATGGTCAAGGTTCACTTGGTACAGAGTTAAAGACTCTTGATAAAGAGGTTAATGTCATTGGAATAGGTCAGATTTTCATCCTTCAAAGGCTTCAACATAATATCTGTGAAAGCTTGTTAAAAAAGAATGACAGTTCTACTTCTGAAGTTAAGCCGTATAGGTGGGCTTCATCTGAAGATTGTGGTACATTATCACAATGTAGATTGATGTTGGGGAAATTTTGTTCTGATCTTTCGTGGTTTGTTACCACGTCTCTTTTAAAGAAAGCTTCATTCATCATAAGATCGGCTCAAAGCAAGATCGTGTATCAAGTTAAGGGAAATGATACCGATATTGTTAGTCGTTATCTTATCGATGTTGTAAACTTCATACTGAAAAATGGATCACTGGTACCGATCATTTGTCAATTTGATTTGTTCAAGGATTAttatggtgaagaagatgaagcttCCTCAGTTCCATCTAATTTAATGGAAGGCCTACGGCGTTCCAAACGCAGGATTGTGCAGCCTAAACGTTATGTGATCGACCATGTTGAGAAGTTGGAGGTTGGTAGTTTTAGAACCTGGCCGTATAAGAGATCAAGATATGTGATCGATGATGGAGAGTCTTCTTCAGATTCAGAAGACGATGATGGTAATAGTGATGCCGATGAGTTGAATTCAGACCCCTACAGCATTCAGTCTACCCTATCAAACGATGTAGAAGTCGATGATAAAGTTTCTTTGGGGGATTTTTATAGTTTCGGAAAAGAGCAGCTGAAGAGGAGGCGATTTCATGATTCAGATTATATGGATTTGGAAGGAAAATGGGAAGGGATACAGTTCAAAAGCGGAGCTAAAACAAAAAGATACCGTTCCCTTTTTACAAGCAGAAATGGTGTTCCTGAAGAACAAGTTCATAAAGACGGTACATCGTTAAATGCTGATGCCAGAAAGGAAATTATAGATACTTACATGAAGAACTTCGATAGTCTGCCAACTGAAGAAGAGCCGGTCATTAATGAAGAAACAAGCAAGTTGGACCAGAAGGTTGAAGAAAATGTATCGGAAAGTGACGATGTGGAAGAAAATCATGATGATTTGTGGGCAGAATTTGATATAGCTTTGATGTCAAGTAATCTTCTTGATGGAACTGAGGATTCAAATGCTGAGGTTTTAGCTGAATCCAAGACAGAATCCATGGAAATTTGTGAACATGATTATATAATGGATGAACAAATTGGAATATACTGCCTTCGATGCGGATTTGTGAAAACCGAGATACGACACATTTCTGAACACGTTATTGAAAGTCCAAGACGGTACAGAGAGGCGAAACAATGCATTGAAGAAGATAGGGAACATAAATCAGAGCAAAAAGTTGATGAAGATGTTAATAATGATTTGCTTTCAACTGATGCTACTGAACCTGATGAACCAATATCTACAGAAAATGACAGTGTTTGGGAACTGATTCCAGAACTCAAAGAAAAAATGCATGCACACCAGATAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGAAAGAAAAATCCGAAACAAATGGTGGTTGTGTTATATCACATGCTCCGGGTGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAGAGACCATTAATCCTTGCTCCGAAAACCACGCTCTACACGTGGCGCAAAGAGTTCAAAAAATGGAAGGTTGATATACCGATGTATCTTATCCATGGCCATCGAACTTGGAAAGGTTCGACAACACCAAAATCAATGGTTCTGCCTGGCATTCCAAGACCTTCTAGTGGTGTCAAACATGTTTTAGATTGTCTTAGCAAGATCCAAAAATGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATACTTCATTTTTAACATTAATGAGATCAGAAGATACAAAATTTGCACACAGAAGATACATGGTTAAAGCATTGAAAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGaggaaatgtttgatgaaactTCCAACAGAATTGAGAATATTACTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTCCACGAAGTTTTACAAGAGTTGGATTCTAAATACCGAAGGAGAGGAAAAGTAGCGAAGAAAGAGCCGCATTTGCTCGAGGCGCGGGCGAGGAAATTCTTCTTGGACAAcattgaaaagaaaatcaactCAGACATTGATGAGGAGAAGATGCAAGGTCTACATGTGCTGAGAAAAATTACTTCTGGTTTTATCGATGTTTACGACAGTGGAAATTCTTCTGATACTCTTCCTGGTTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGTGCACGGGTTACCCTCTTGAGGTTGAGCTTTTGATAACACTTGCATCGATACATCCATGGTTGATCAAAACAGCAGCAGCATGTGCAGCTAAGTTTTTCGCCGAGGAAGAATTGGAGAAACTAGAAGCATTGaagtttgatttgaaaaaagGTTCCAAAGTGAGATTTGTTCTGAGCCTAGTCTCACGTGTagtgaaaaaggaaaaagttctTATCTTTTGTCACAACCTTGCACCAGTGAGGTTTTTTATAGAGTTATTTGAAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTTTTACTAACTGGTGAACTAGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATACTCGCGGCAGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGGATTAGTTTAACCGCAGCTTCTAGAGTGATTTTTTTGGATTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACAACCGAGTCGATGGAGGAAGCTAAGCATAGAAGAACTGGTTGGAAAGAGTGGATTTCTTGCATGATTTTCAGTGAGGAATTTGTGGAAGATCCTTCTAAATGGCAAGCTCAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAggataaatctaaaataattcaTAAGATTATGAAGAATGAAAAGGCATCAACAAGCTAA 3621 0.3701 MVPGKRNWHQQKHPFDDDYPFEAVLNGSWQPVELIKVESGKTSIQFMDTEQFQSPLSSNIRIKSRKATAYDCTSFLRPGIDITMLLGYCHHDNPNQFGPIPMWMDARINSIQRQPHEYDQCSCQFYVNLYDGQGSLGTELKTLDKEVNVIGIGQIFILQRLQHNICESLLKKNDSSTSEVKPYRWASSEDCGTLSQCRLMLGKFCSDLSWFVTTSLLKKASFIIRSAQSKIVYQVKGNDTDIVSRYLIDVVNFILKNGSLVPIICQFDLFKDYYGEEDEASSVPSNLMEGLRRSKRRIVQPKRYVIDHVEKLEVGSFRTWPYKRSRYVIDDGESSSDSEDDDGNSDADELNSDPYSIQSTLSNDVEVDDKVSLGDFYSFGKEQLKRRRFHDSDYMDLEGKWEGIQFKSGAKTKRYRSLFTSRNGVPEEQVHKDGTSLNADARKEIIDTYMKNFDSLPTEEEPVINEETSKLDQKVEENVSESDDVEENHDDLWAEFDIALMSSNLLDGTEDSNAEVLAESKTESMEICEHDYIMDEQIGIYCLRCGFVKTEIRHISEHVIESPRRYREAKQCIEEDREHKSEQKVDEDVNNDLLSTDATEPDEPISTENDSVWELIPELKEKMHAHQIKAFEFLWQNIAGSMEPSLMKEKSETNGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLILAPKTTLYTWRKEFKKWKVDIPMYLIHGHRTWKGSTTPKSMVLPGIPRPSSGVKHVLDCLSKIQKWNSHPSVLVMGYTSFLTLMRSEDTKFAHRRYMVKALKESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRRGKVAKKEPHLLEARARKFFLDNIEKKINSDIDEEKMQGLHVLRKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMAECTGYPLEVELLITLASIHPWLIKTAAACAAKFFAEEELEKLEALKFDLKKGSKVRFVLSLVSRVVKKEKVLIFCHNLAPVRFFIELFEKYFQWQNGKEILLLTGELDLFERGKVIDKFEDTRGSSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTESMEEAKHRRTGWKEWISCMIFSEEFVEDPSKWQAQKIEDDILREMVEEDKSKIIHKIMKNEKASTS 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01908 1206 Gene3D - 592 891 IPR038718 -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 457 487 - -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 334 348 - -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 592 606 - -
Tsu03g01908 1206 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Tsu03g01908 1206 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1205 - -
Tsu03g01908 1206 SMART helicmild6 1041 1126 IPR001650 -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 573 607 - -
Tsu03g01908 1206 SMART ultradead3 619 857 IPR014001 -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 463 478 - -
Tsu03g01908 1206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1012 1178 IPR001650 -
Tsu03g01908 1206 Gene3D - 928 1206 IPR027417 -
Tsu03g01908 1206 Pfam Helicase conserved C-terminal domain 1009 1125 IPR001650 -
Tsu03g01908 1206 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1205 IPR044567 GO:0080188
Tsu03g01908 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1192 IPR027417 -
Tsu03g01908 1206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 648 849 IPR014001 -
Tsu03g01908 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 851 IPR027417 -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 573 591 - -
Tsu03g01908 1206 CDD SF2_C_SNF 1008 1137 - -
Tsu03g01908 1206 MobiDBLite consensus disorder prediction 331 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01908 Tsu-Chr3 19765538 19770397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01908 1005 1144 RAD5 or RAD16-like Gene Family AT5G43530 34.266 6.25e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu03g01908 SNF2_N 1.7e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01908 K10875 - gmx:100781856 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01908 03 19765538 19770397 Tsu05g03379 05 45139288 45146403 PCT