Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01904 ATGGATTCGGAGTTTCCTAACAAAGCATTAACCACCACTCGTTTTTCCGACCTCAAACCGCCACTTTCCGATCCCGTTCTTCAAGCTCTCACACACTCCGGCTTCGATTTCTGCACTCCCGTTCAAGCCGCCACCATTCCTTTACTCTGTAGTTTCAAAGATGTCGCCGTCGATGCCGCCACGGGTTCAGGAAAAACCCTAGCTTTCGTCATTCCACTTGTGGAAATTCTTCGCCGCAACTCTTCCAATCCCAAACCTCACCAGGTATTGGGAATAATTATATCTCCTACAAGGGAACTAGCATCCCAAATATATCATGTTGCACAGCCTTTTATTTCAAGTTTAACGAATGTTAAGTCCATGTTACTCGTCGGTGGAGTGGAAGTAAAAACTGATATGAAGAAAATTGAGGAAGAAGGAGCTAACGTATTGATTGCCACGCCTGGTCGATTACACGACATAATGAATAGGATGGATGTTATGGATTTCAAAAGCTTTGAGattttgattttggacGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAAATAAATGCTATCATAACTCAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCCGAAACAAAAAGAATGAATGATTCTGCTGCATCAAAGCAGCTAGAATCTTCAAATTCAAAGATACCTTCAGGTCTTCACATTGAGTACATGGAATGTGAGGCAGATAACAAACCATCACAGCTGGTAGATTTCCTTGTTAAGAACcgctcaaaaaaaattataatATATTATATGACTTGTGCTTGTGTTGACTACTGGGGAGTTGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAGGCACTAACTTCTTTTACATCTCTTTCAAATGGAATTCTTCTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTTTTCGTACATAGGTCTGGTCGAACTGCTCGGCTGGGTAAACAAGGGCATGCTGTGGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAGGAGTTCCTCTTCAAGAGAGACTGTGCTCCAACAATGCACCTGATGTTGTACCTGAGATTCGTTCTGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGA 1368 0.4225 MDSEFPNKALTTTRFSDLKPPLSDPVLQALTHSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRNSSNPKPHQVLGIIISPTRELASQIYHVAQPFISSLTNVKSMLLVGGVEVKTDMKKIEEEGANVLIATPGRLHDIMNRMDVMDFKSFEILILDEADRLLDMGFQKQINAIITQLPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKRMNDSAASKQLESSNSKIPSGLHIEYMECEADNKPSQLVDFLVKNRSKKIIIYYMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQTVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRSGRTARLGKQGHAVVFLLPKEESYVEFLRIRGVPLQERLCSNNAPDVVPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01904 455 Pfam Domain of unknown function (DUF4217) 418 455 IPR025313 -
Tsu03g01904 455 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 448 - -
Tsu03g01904 455 SMART helicmild6 292 377 IPR001650 -
Tsu03g01904 455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Tsu03g01904 455 SMART DUF4217_3 415 454 IPR025313 -
Tsu03g01904 455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 424 IPR001650 -
Tsu03g01904 455 PANTHER RNA HELICASE 25 448 - -
Tsu03g01904 455 SMART ultradead3 34 245 IPR014001 -
Tsu03g01904 455 Gene3D - 255 455 IPR027417 -
Tsu03g01904 455 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Tsu03g01904 455 Gene3D - 3 227 IPR027417 -
Tsu03g01904 455 CDD DEADc_DDX55 26 224 - -
Tsu03g01904 455 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Tsu03g01904 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 396 IPR027417 -
Tsu03g01904 455 CDD SF2_C_DEAD 256 386 - -
Tsu03g01904 455 Pfam Helicase conserved C-terminal domain 265 377 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01904 Tsu-Chr3 19707478 19712661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01904 13 386 Eukaryotic Initiation Factors Gene Family AT3G19760 27.733 1.23e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01904 K14809 - gmx:100801482 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01904 03 19707478 19712661 Tsu03g01904 03 19707478 19712661 ECH