Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01902 ATGGGTGGTAATACTAATTCCCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTTCTCCTTATTTCCCTTCAAATGATCCTCAAAAGTTCGCAATTGTTCACAAAGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTCCAGGAACTTCCTATTCAACAGAGATCAGATGCAGTAAGCAGTTTAGTGTATGAAGCACATGCAAGAGTTAAGGATCCTGTTTATGGTTGTGTTGGAGCCATTTCTTACCTTCAAAACCAAGTTTCTGATCTTAAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTATGCATCCAGATGCAACATGAGGAGCCTGTAATGCAAAATTCCGATATTGCCCTTGATCACAAATCTTCTTACCTTCTCCAAAATGATCTTCCTCAGTATCTCAATTTTCCATCTTCAAGCAATGTAATTCATTATGATTCTCTTTCAAGAGAGAGCATTTTTTGA 492 0.3862 MGGNTNSPCASCKLLRRRCAKDCIFSPYFPSNDPQKFAIVHKVFGASNVSKMLQELPIQQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQNQVSDLKMQLAVAQAEILCIQMQHEEPVMQNSDIALDHKSSYLLQNDLPQYLNFPSSSNVIHYDSLSRESIF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01902 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 4 159 - -
Tsu03g01902 163 Coils Coil 87 107 - -
Tsu03g01902 163 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Tsu03g01902 163 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Tsu03g01902 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01902 Tsu-Chr3 19661613 19662419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01902 1 134 AS2 family AT2G30130 76.812 1.45e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g01902 LOB 2.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01902 - - gmx:121173085 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01902 03 19661613 19662419 Tsu05g03373 05 45088873 45090469 ECH
Tsu03g01902 03 19661613 19662419 Tsu03g01902 03 19661613 19662419 ECH
Tsu03g01902 03 19661613 19662419 Tsu05g03373 05 45088873 45090469 PCT