Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01894 ATGATTTCTGAATCTCAAGTAGATGAAAACCAGTTAATTAGTGCCGGAAAATTGCCAGGTTGTACAGGAAGATCTACCAAATGgcaTAATCGCAAAAGTAAAAATGGTCTTCGGAGGCTACTGCAATCCCGTTTTCTTCCTGTTGATCTTCCTATTGCTCCTCGCGTTGATCCTCATAACCGCGAGGCTATTCCTGATAGTCCTTTGCTTTCTCCTTCTCCTTCTCCAtctccatccccatccccatCCCCTTCACCTTCCCCATCTGCCTCAAAAACACCACCAATAGTGCCAAAGCCGGCTTCCCCCAGTCGAAATGTTTCTGATTCTCCTTCTGCCCTGCCTGCACCACAACCAAAAAGTACCTCATCAAAGAGTCACATTCCTATTGTGGCTGGAATTGTGGGTGGTGCTGTATTTATTCTCATTTCAATCATTGTCATATATCTCTTTAAAACCAACAAGGTAGCCACCGTTAAACCATGGGCTACAGGATTAAGTGGACAGCTTCAGAAGGCATTTGTGACAGGTGTGCCGAAGCTAAAGAGATCAGAACTTGAAGCGGCATGCGAAGATTTTAGTAATGTAATTGGTACTTCACCCATTGGTCAAGTGTTCAAAGGGACTCTATCCAGCGGTGTCGAAATAGCTGTGGCCTCTGTTACCACGACATTATTGAAAGATTGGTCAAAGACTTCAGAAGTTCAATTTCGTAAAAAGATAGATACATTATCAAAGATGAACCACAAGAATTTCGTAAATCTTATTGGATATTGCGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAATATGCCCCAAATGGAACACTCTTCGAGCATTTACATGTAAAAGAAGCTGAGCATTTGGATTGGGGAACAAGACTTAGAGTTGCAATTGGCACGGCTTACTGCCTGCAACATATGCACCAGTTGGATCCTCCTTTCGCTCACAGTGACCTAAATTCTTCATCTGTCCAACTCACTGACGACTACGCTGCCAAAATCTCAGACTTGAGTTTCTTGAACGAAATAACTTCAGCTGATACAAAAGATGCAGCTAAGAAACACAATGAGACGACATTAGCAAGTAACATTTACAGCTTTGGCATTATATTACTAGAAATGGTAACAGGCCGTGTTCCTTATTCAATGGATAAAGATGGCTCACTTGAAGAGTGGGTTTCACACTATTTACAAGGGAACCAGTCTCTCAAAGAAATAGTGGATCCAACACTAGCGTCCTTCCAAGAAGAACAATTAGTACAAATTGGTGCATTGATTAAATCTTGTACCAATGCTGATCAAGACGTAAGACCAACAATAAAACAAGTTTGTGAAAGATTAAGAGAGATAACAAAAATAAGTCCTGAAGCAGCTGTTCCTAAACTTTCACCACTTTGGTGGGCAGAACTCGAGATTGCTTCTTTTGATGCCAGCTGA 1446 0.4087 MISESQVDENQLISAGKLPGCTGRSTKWHNRKSKNGLRRLLQSRFLPVDLPIAPRVDPHNREAIPDSPLLSPSPSPSPSPSPSPSPSPSASKTPPIVPKPASPSRNVSDSPSALPAPQPKSTSSKSHIPIVAGIVGGAVFILISIIVIYLFKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSPIGQVFKGTLSSGVEIAVASVTTTLLKDWSKTSEVQFRKKIDTLSKMNHKNFVNLIGYCEEDEPFTRMVVFEYAPNGTLFEHLHVKEAEHLDWGTRLRVAIGTAYCLQHMHQLDPPFAHSDLNSSSVQLTDDYAAKISDLSFLNEITSADTKDAAKKHNETTLASNIYSFGIILLEMVTGRVPYSMDKDGSLEEWVSHYLQGNQSLKEIVDPTLASFQEEQLVQIGALIKSCTNADQDVRPTIKQVCERLREITKISPEAAVPKLSPLWWAELEIASFDAS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01894 481 Gene3D Transferase(Phosphotransferase) domain 1 274 462 - -
Tsu03g01894 481 ProSiteProfiles Protein kinase domain profile. 191 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01894 481 Pfam Protein tyrosine and serine/threonine kinase 194 450 IPR001245 GO:0004672|GO:0006468
Tsu03g01894 481 SUPERFAMILY Protein kinase-like (PK-like) 174 450 IPR011009 -
Tsu03g01894 481 MobiDBLite consensus disorder prediction 1 125 - -
Tsu03g01894 481 Gene3D Phosphorylase Kinase; domain 1 163 273 - -
Tsu03g01894 481 PANTHER PROTEIN MALE DISCOVERER 2 2 481 - -
Tsu03g01894 481 MobiDBLite consensus disorder prediction 69 101 - -
Tsu03g01894 481 MobiDBLite consensus disorder prediction 103 125 - -
Tsu03g01894 481 PANTHER BNAA09G55080D PROTEIN 2 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01894 Tsu-Chr3 19598420 19603015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01894 116 450 Receptor kinase-like Gene Family AT3G58690 28.418 2.49e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Tsu03g01894 PK_Tyr_Ser-Thr 6.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01894 - - gmx:100784541 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01894 03 19598420 19603015 Tsu03g01894 03 19598420 19603015 ECH
Tsu03g01894 03 19598420 19603015 Tsu05g03362 05 45012734 45016768 PCT