Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01881 ATGAAAGGCATGAAGGTTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAGTTACTCAAAAGAAGATGCATACCCAATTGCATATTTGCACCATACTTTCATTCTAACGAGTGCAAGAAATTCGCCAAGGTTCACAAAGTATTTGGAGCAAGCAATGTAAGCAAGATACTGATTGAAGTGCCAGAAAAACAGAGAGAAGACACAGTGAATTCTTTAGCTTATGAAGCAGAGGCAAGGCTTAGAGACCCGGTTTATGGATGCATTGGTTCCATAGCTCTGTTGCAAAGGAAAATGATGGAACTTCAACATGATTTGGCCATTGCTAAGGACCGTCTTGCTCGTTGTCGCGCTGTGGCTGCTGCTAGAACTACCGCTACTACTCCTTTTGTTGATAGTTTGCATTCTCATGTTAGTTTGCCTCCATTTCCTGAGTTTTACACTTCTAATGATCTTAATGATATCTTCTGCCATGGTTCTTCTTCGCAATTATCGGGTCAAAATGAAATAGTGGATGATTTCAGTCAAATTCCATATATATTTTGA 549 0.4026 MKGMKVYEPRSSSSCAACKLLKRRCIPNCIFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIALLQRKMMELQHDLAIAKDRLARCRAVAAARTTATTPFVDSLHSHVSLPPFPEFYTSNDLNDIFCHGSSSQLSGQNEIVDDFSQIPYIF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01881 182 Coils Coil 93 113 - -
Tsu03g01881 182 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Tsu03g01881 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 176 - -
Tsu03g01881 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 4 176 - -
Tsu03g01881 182 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01881 Tsu-Chr3 19492858 19493541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01881 4 181 AS2 family AT3G11090 55.056 5.94e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g01881 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01881 - - gmx:100305534 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01881 03 19492858 19493541 Tsu03g01881 03 19492858 19493541 ECH