Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01880 ATGGAAAGTTCAGTGCGTGTTAAAGAAGTTGTGGTAGTGACACCTTCAGAGCCCACACCAAGTGGTATCCTATTACTTTCGCCACTCGACTCTCAACTTTTTCTTCGTTTCACTATAGAATATCTTCTTATTTACAGGCCCGGCCCGGGCCTGGACAAAGTAACAACTACTTCTCGTTTAAAAGCTGCATTAGCAAAAGCTCTTGTTCCTTATTACCCATTAGCTGGAAGAGTACGGCCTAGATCAGATAATAATATGGGCCTTGAGGTATTATGTAAATCCCAAGGAGCTGTTTTCATTGAAGCCGTTAGTGACAGTTACACTGTCAATGATTTCGAGAAAGTTCCAAAAACGGTTACTCAATGGAGAAAACTATTGTCGTTTAGTGTTTCCGATGTTCTCAACGGATCTCCGCCGTTAATTGTTCAACTGACATGGTTAACTGACGGCGGCGCTGCGTTGGGAGTCGGGTTTAATCACTGTATCTGCGACGGTATTGGTAGTGGCGAGTTTCTCAACTATGTTTCCGAATTGGCTTCAGGAAAACGCGGTGGTGCTAGACCGCAACCGGTTTGGGATCGACATTTGTTCAATGTTTCTCCAATGACTCGTGTTGACTCGGTGAGTCACAATCATCCCGAGTTCAACCGTGTACCAGATCTTTGCGGGTTTATGAACCGGGTCGTAAATTGTCTCAGACCAACTTGCATTGTATTCAATAAGCGACGGTTAAACGATCTCAAATTCATGGCTCGACGCACGTATCAAATCTCTGAGCCATCGTTTACATCGTTTGAGGTTCTCGCGGCACACGTGTGGAGAAGCTGGGCAAGAGCAATGGGGTTTCCACCGAACCAGACGTTAAAGCTTTTGTTTAGTGTAAACGTGAGAAACCGGGTCAAACCGGGTTTACCCGATGGATACTACGGAAACGCATTTGTTCTGGCATGTGCGCAGACAAGTGCGAGGGAATTAGGGGAAAGAGGAATCGGGTACGGGTCGGGTTTAGTGAAAAGAGCGAAGGAGAGAGTGGATAGTGAGCATGTGAGGAGAGTGGCTGAGTTTGTATCCGAGTCAAGAGCGAGTCCTGAGTTAGTGGGTGTGTTGATATTGTCACAGTGGTCGAGGTTGGGTTTGGATCGGGTTGAGATTGGAATGGAGAAACCGGTTGTGTTACCCATTTGCAGTGATAGGTACTGTTTGTTTTTGCCGGTGAAGGGTGAAAGAGATAGTGTCAAGGTCATGGTGGCTGTTCCCGCCGCCGCCTTTGATAACTACCACCGTTTTCTTAGGGAATAG 1299 0.4657 MESSVRVKEVVVVTPSEPTPSGILLLSPLDSQLFLRFTIEYLLIYRPGPGLDKVTTTSRLKAALAKALVPYYPLAGRVRPRSDNNMGLEVLCKSQGAVFIEAVSDSYTVNDFEKVPKTVTQWRKLLSFSVSDVLNGSPPLIVQLTWLTDGGAALGVGFNHCICDGIGSGEFLNYVSELASGKRGGARPQPVWDRHLFNVSPMTRVDSVSHNHPEFNRVPDLCGFMNRVVNCLRPTCIVFNKRRLNDLKFMARRTYQISEPSFTSFEVLAAHVWRSWARAMGFPPNQTLKLLFSVNVRNRVKPGLPDGYYGNAFVLACAQTSARELGERGIGYGSGLVKRAKERVDSEHVRRVAEFVSESRASPELVGVLILSQWSRLGLDRVEIGMEKPVVLPICSDRYCLFLPVKGERDSVKVMVAVPAAAFDNYHRFLRE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01880 432 Gene3D - 1 217 IPR023213 -
Tsu03g01880 432 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 429 - -
Tsu03g01880 432 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 429 - -
Tsu03g01880 432 Gene3D - 230 429 IPR023213 -
Tsu03g01880 432 Pfam Transferase family 4 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01880 Tsu-Chr3 19479480 19480948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01880 5 432 Monolignol Biosynthesis Gene Families AT5G48930 26.411 1.39e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01880 - - gmx:100803812 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01880 03 19479480 19480948 Tsu03g01880 03 19479480 19480948 ECH