Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01879 ATGTCAAGCCCTAATTCCCGATCATTAAACTGGCACTACACAGAGCTAGATGACAGAGACCTTGAAATCAGAGGCAGAACACTCTTCTTCATAATAGTACTCTTCTCTATTTTCCTTCTCGTTATAGTTCTCTTTTTCTACACTCGTTGGGTTTGCCGTTACCATTCACACATAACAACCACAACTCTCTCTACCTCTATTCACGCGCCACCACCTGCACAACCGCAAGGACTTGACCCTGCTTTGATCAAGAAACTGCCTATTATACTTCATCAAGCTCCGACTGATCCAGAAAACGGCGCGTGGGAAGACACGGAGTGTTGTATTTGTCTTGGAGAGTTCAGAGACGGTGAGAAAGTGAAGGTTTTACCAGGGTGTGAACATTATTTTCATTGTGATTGTGTTGATAAGTGGTTAACTTGTCAATCTAGTTGTCCACTTTGTAGAGGTTCTCTTAAAATTGAATCTTCTTTTCCTGAAATTTTGATTCAGGAACCACCCATTAGAATTGATATTATTCAATTCTAG 528 0.4091 MSSPNSRSLNWHYTELDDRDLEIRGRTLFFIIVLFSIFLLVIVLFFYTRWVCRYHSHITTTTLSTSIHAPPPAQPQGLDPALIKKLPIILHQAPTDPENGAWEDTECCICLGEFRDGEKVKVLPGCEHYFHCDCVDKWLTCQSSCPLCRGSLKIESSFPEILIQEPPIRIDIIQF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01879 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Tsu03g01879 175 PANTHER RING-H2 FINGER PROTEIN ATL66 2 164 - -
Tsu03g01879 175 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Tsu03g01879 175 SMART ring_2 107 148 IPR001841 -
Tsu03g01879 175 Pfam Ring finger domain 106 149 IPR001841 -
Tsu03g01879 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 164 IPR044675 -
Tsu03g01879 175 SUPERFAMILY RING/U-box 101 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01879 Tsu-Chr3 19455055 19455752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01879 2 157 C3H Transcription Factor Family AT3G11110 42.073 4.33e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01879 - - gmx:100794927 273.092