Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01877 atgaGTATGGAAAATTACAACAATGATTCTTCTGAGTGGCAACAACAACATAAGCATTGGTCTCAATATAGTAGTGATGATCATTCACACTTTCCAACACAAATTCTTCCTCATCATAATATTTCTGATTCTTCTTCTGCTTCTTTTCAATATAGTGAATTTCAATCATCATGGCCTTTACCTATTGAAGAAAGTTTAGATGATAGAGCAGTAAGTGCTTCTAAGAGTCATAGTCAAGCTGAGAAAAGACGCAGAGATAGGATTAATACTCAACTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGTAGTGTGATAGATCGAGTCAAAGATTTAAAGCGAAAAGCAATGGATGTTAGCAGAGTCATAACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTACAACAATGTTGAAGATGAAACCAACAATAACAAactaaacaaattcaaaaacaatttcatcatcaaagcttctatttgttgcGAGGATCGACCGGAACTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGTAGAATCAAAAGTATATTGATACTTTGTTCTAAGGATAGTGAAGAAAATGTTTGCATTAATACTCTTAAACAGTCCCTTAAATCAGCTGTGACAAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAAAGGTTCTTCTTGCCTTCACATTTTGTATAG 786 0.3244 MSMENYNNDSSEWQQQHKHWSQYSSDDHSHFPTQILPHHNISDSSSASFQYSEFQSSWPLPIEESLDDRAVSASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDRVKDLKRKAMDVSRVITVPTEIDEVSIDYNNVEDETNNNKLNKFKNNFIIKASICCEDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILILCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01877 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Tsu03g01877 261 CDD bHLH_AtAIG1_like 67 144 - -
Tsu03g01877 261 Gene3D - 67 129 IPR036638 GO:0046983
Tsu03g01877 261 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
Tsu03g01877 261 SMART finulus 78 127 IPR011598 GO:0046983
Tsu03g01877 261 PANTHER TRANSCRIPTION FACTOR BHLH51 32 260 - -
Tsu03g01877 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 125 IPR036638 GO:0046983
Tsu03g01877 261 PANTHER TRANSCRIPTION FACTOR BHLH30 32 260 IPR045847 GO:0003700|GO:0006355
Tsu03g01877 261 CDD ACT_UUR-ACR-like 169 204 - -
Tsu03g01877 261 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01877 Tsu-Chr3 19393446 19395607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01877 48 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.511 3.56e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu03g01877 HLH 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01877 - - gmx:100799687 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01877 03 19393446 19395607 Tsu03g01877 03 19393446 19395607 ECH