Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01871 ATGGCATCATCAAAACACCGCCCACCACCGTCCCAGCCACTTTCCGACTCAGATTCCGACGGCGGTTCCTCCACCTCTACACTCCTCCGTCACTCAGACCTCTCCGAATCAATATTCAAATCCTACTTCAATTTCTCTGGCCACTCCTCAACCAATGCCACCTCCGCTGATCTCTCGAAAATCCAATCGTTCCTCACCTCCTCTTCCTCCGGTGCTCTTTCCTGCCTCATTTGTCTCGAACGCATCAAACCCTCCGACCCAACATGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCATCTCTTCTGTATCCAAAGCTGGTCTCGTTCAAGCTTCCGATTCTCGCCGCCGCACGCGCTTGACGATCCTTGGGTTTTACCTCATTCTTGTGGTGATGTTTGTGGTAGATCTTTGAAGAACAATTGTGGGCATTATTGTTTGCTTTTATGCCATCCTGGGCCATGTCCATCTTGTCCACAACTTGTTAAAGTTCGATGCTTTTGTGGGTCTCATCAAGATGTTCGAAGATGTGGGTTCAAGGAGTTTTCTTGTGAAGCTCCTTGTTCAAAGTTATTGGATTGTGGTGTTCATAGATGTGTTGAGATTTGTCACCGTGGCGAGTGTCCGCCGTGTCGGACACGTGGTGTTTATAAGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAGTGTTGTGATCGTGTTTTTCGATGTGATGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTGAGAGAGGGTGTCATTCTGGTCAATGTGGTGAGTGTCCTTTACAAGGGAAGAGAACATGTCCTTGTGGAAAAAGGGTATATGAAGGAATGCCTTGTGATGCTCCTATGCAGGTTTGTGGATCTACTTGTGATAAAATGTTACCGTGTGGGTATCATAGGTGTCATGAAAGATGCCATCGTGGACAATGTATTGAGACTTGTAGGATTGTTGTAAGGAAATGTTGTCGCTGTGGTAGCCTCAAGAAAGATGTACCTTGCTATCAAGATTTGGTATGTGAGAGGAAGTGTCAGACGTTGCGCGACTGTGGTAGGCATCCTTGTAAACGCCGCTGCTGTGATGGAGATTGCCCTCCGTGCTCAGAGATATGTGGCAAGCGGCTTCGCTGTAGGAACCATAAATGCCAATCTCCATGCCATAGAGGTCCCTGTGCTCCTTGTCCTATTATGGTGACAATTTCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCCAAATGTCGTAAACAATGTCCTATCAAACCTTTGTGCCGGCATGCATTAATCTGCAAGCCACACAAATGCCATTATGGAGCCTGCCCCCCTTGTCGCCTACCTTGTGCAGAAGAGTACCAATGCGGCCATGCATGCAAATTAAGGTGTCATGGTGCAAGACCTCCTCCAAATCTAGAATTTACTCTcaaaccaaagaaaaagaagaatacaCAACAAAGTGAAAGTGTTCTCGGCACTCCATGCCCTCCTTGCCCGGAACTAGAATGGAGACCATGTGTAGGGCAGCACATTGGAGCAGAGCGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCGTGTGGTAATCATTATTGTACTAAAACTTGCCATCCCTTGGGGAACCAGTCTTCCACAAACCAGTCACTAAGAAGTGAGGCCTGTGAAGATTGTTCGCTTTCTTGCCAAAAGGAAAGAAAGCCCAAGTGTCAACATCACTGTCCTCGGCGATGCCATCCTGGTGATTGCCCCCCATGCAAGGTGCTAGTTAAACGGTCATGCCATTGTGGTGCAATGGTCCATGCTTTTGAGTGCATTTATTACAACGGCCTATCTTCAAAGGATCAAGAGATTGCTCGGTCATGTGGTGGACCATGTCATAGAAAGATGCCAAATTGTACACATCTATGCCCAGAGACATGTCATCCTGGCGAATGCCCAAATCCTAATAAATGCGGTAAAAAGGTCACTGTTCGCTGCAAATGCCAAACACTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCCGGTTCCCATCCAAGTGATATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCGGACTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTGCAATTACGTAAATCTAGAGTTACCGAGGTAAAGGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGAAAAAGGCGGGAACGGGTAGTAGAATCCAATGAACCGACAATACTACAGAAAATAATTTCCAGAACAAAGCAGGTTCAATATTTGTGTCAAATATTGTTACCAAACAGTGTTATCGGCCATGGTGGCATCATGTGGGATATTGGCGGTGGGTTTTTGGCTTTCCACCATGGCCAATTTTGTGAAGGATGGCAGCGCCATACTTGGATATGGCGGCGCCACATATCAGCCGGTATGGTGGGTTTTTGGCTTTCTGCCATCGACAACACTGTTACCCTTGTATTGTAG 2562 0.4606 MASSKHRPPPSQPLSDSDSDGGSSTSTLLRHSDLSESIFKSYFNFSGHSSTNATSADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRSSFRFSPPHALDDPWVLPHSCGDVCGRSLKNNCGHYCLLLCHPGPCPSCPQLVKVRCFCGSHQDVRRCGFKEFSCEAPCSKLLDCGVHRCVEICHRGECPPCRTRGVYKCQCGKVKEERECCDRVFRCDDPCEKKLSCGKHVCERGCHSGQCGECPLQGKRTCPCGKRVYEGMPCDAPMQVCGSTCDKMLPCGYHRCHERCHRGQCIETCRIVVRKCCRCGSLKKDVPCYQDLVCERKCQTLRDCGRHPCKRRCCDGDCPPCSEICGKRLRCRNHKCQSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCRKQCPIKPLCRHALICKPHKCHYGACPPCRLPCAEEYQCGHACKLRCHGARPPPNLEFTLKPKKKKNTQQSESVLGTPCPPCPELEWRPCVGQHIGAERMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHPLGNQSSTNQSLRSEACEDCSLSCQKERKPKCQHHCPRRCHPGDCPPCKVLVKRSCHCGAMVHAFECIYYNGLSSKDQEIARSCGGPCHRKMPNCTHLCPETCHPGECPNPNKCGKKVTVRCKCQTLKKEWLCQDVQAAHNRAGSHPSDIPKNQFGVGLIPCNSDCKSKVQVVESELQLRKSRVTEVKEPDNEKSVPKRRKRRERVVESNEPTILQKIISRTKQVQYLCQILLPNSVIGHGGIMWDIGGGFLAFHHGQFCEGWQRHTWIWRRHISAGMVGFWLSAIDNTVTLVL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01871 853 CDD NF-X1-zinc-finger 130 178 - -
Tsu03g01871 853 SMART znfxneu3 549 581 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 354 373 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 654 683 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 301 321 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 142 160 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 381 400 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 168 190 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 467 512 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 444 459 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 194 213 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 247 266 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 SMART znfxneu3 591 609 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 CDD NF-X1-zinc-finger 344 392 - -
Tsu03g01871 853 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 14 112 - -
Tsu03g01871 853 CDD NF-X1-zinc-finger 237 284 - -
Tsu03g01871 853 CDD NF-X1-zinc-finger 371 419 - -
Tsu03g01871 853 CDD NF-X1-zinc-finger 591 620 - -
Tsu03g01871 853 CDD NF-X1-zinc-finger 184 232 - -
Tsu03g01871 853 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 122 785 - -
Tsu03g01871 853 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 14 112 IPR034078 GO:0003700
Tsu03g01871 853 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 122 785 IPR034078 GO:0003700
Tsu03g01871 853 MobiDBLite consensus disorder prediction 1 27 - -
Tsu03g01871 853 MobiDBLite consensus disorder prediction 742 766 - -
Tsu03g01871 853 CDD NF-X1-zinc-finger 291 340 - -
Tsu03g01871 853 Pfam NF-X1 type zinc finger 142 159 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 592 608 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 448 458 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 375 399 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 194 212 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 549 560 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 354 372 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 247 265 IPR000967 GO:0005634|GO:0008270
Tsu03g01871 853 Pfam NF-X1 type zinc finger 301 319 IPR000967 GO:0005634|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Tsu03g01871 zf-NF-X1 0.00028 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01871 K15683 - gmx:100799540 1377.84