Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01866 atggaaaATAAGTTCCAAACCTCAGTTTTACTTGAATTATCAGCAACGGATGATATTGAAGCATTCAAAAAGGAAGTGGAAGAAAAGGGTTGTGATGTAAATGAATCAGGATTTTGGTATTGTAGAAAATTAGGATCTAAGAAGATGTGCTATGAAAAGAGAACACCCCTTATGGTTGCTTCTTTGTTTGGAAGCAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTGTGCATGCCAATTGGTTGTGAAAATGTCACCGCGTTACACTGTGCTGTTTCCGGTGGCTCTGAATCGACTCTTGAGATTGTTAAGCTCTTGGTTGATGCTGGAGCTGATATTGATTGTCTTGATGAGAAAATTAAGCAGAAATTTTTGGTGGCTAATTCGAAAGAATTATTAGGAATTGAGAAGAAAGATTATGTTGTTGATATATCATTGCCTGATATAAATAGTGGTGCTTTCGGAACAGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTGTGTCCATTTGTTCATCCAGGGGAGAATGCTAGGAGGAGAGACCCAAAGAAGTATCCTTATAGTTGTGTTCCGTGCCCTGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGCATGTGAGTATTCACATGGTGTTTTTGAGTCTTTGCTTCATCCTTCACAATACAGAACAAGGCTTTGTAAAGATGAGCTTAAGTGTTCTAGAAAAGTGTGTTTCTTTGCACATAAACCTGAAGAGTTGCGCCCATTGTATGCTTCTACCGGTTCAGCAATGCCTTCACAAGAATCCTTGCCAGTTTCAAATGTTTCAACACCAGTTATGTCTCCCTTGGTAGCTGGTTCATCTCCCAAGAGTGGAAACTTATGGCagaataaaatcaatcaatctCCACCTTCATTGCAACTTCCACGTAGCCATCAGCTGAAAAATACTTCGAGTGCGAAGGATTTGTATCAGGATATAGAAAGAGCTATTAGTCAACAGCAGCAGCAGTTGATTGAAGAAATTCTTTCAATGCAATCTTCAACTCCTACTCAATTTCAATCAATGAGTAGGCTTCAGATGAACCAAAATATGAACAATATTCAAGCAAGTTATCCCTTCAACAACATTGTTTCCTCTCCTATGAGAAAATCATCACCATTTGGATTTGACTCATCAGCTGCTGTGGCTGCAGCAATGATGAACTCAAGATCATCAGCCTTTGCAACACGAAGCCAAAGTTTTATGGATCGCGGTGCGGCAAGCCACCATCTTGGTGCTTCCAAACCCAATGGCAGGATGAACTCTGAACAATGGAGTGATGTGAACAAATTCCAAAAATCTGTTTCTTTTGGGTCTAGATATAATGGGGTAGCTGCCTCACCCTTGGCACGCCAGCCAGAATATGTTGAACCGGATATCTCGTGGGTTCATTCGCTTGTTAAAGATGTTTCATCTGAGAGTTCTGAGAAGCAACATTATGATCTCTACAAACAAATGTTATCACCATGGGCAGAGCAGATTGTAGCATAA 1563 0.3954 MENKFQTSVLLELSATDDIEAFKKEVEEKGCDVNESGFWYCRKLGSKKMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVCMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGADIDCLDEKIKQKFLVANSKELLGIEKKDYVVDISLPDINSGAFGTDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPKKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYRTRLCKDELKCSRKVCFFAHKPEELRPLYASTGSAMPSQESLPVSNVSTPVMSPLVAGSSPKSGNLWQNKINQSPPSLQLPRSHQLKNTSSAKDLYQDIERAISQQQQQLIEEILSMQSSTPTQFQSMSRLQMNQNMNNIQASYPFNNIVSSPMRKSSPFGFDSSAAVAAAMMNSRSSAFATRSQSFMDRGAASHHLGASKPNGRMNSEQWSDVNKFQKSVSFGSRYNGVAASPLARQPEYVEPDISWVHSLVKDVSSESSEKQHYDLYKQMLSPWAEQIVA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01866 520 PANTHER UNKEMPT FAMILY MEMBER 5 359 IPR045234 -
Tsu03g01866 520 PANTHER UNKEMPT FAMILY MEMBER 354 518 IPR045234 -
Tsu03g01866 520 Gene3D - 204 265 - -
Tsu03g01866 520 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Tsu03g01866 520 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Tsu03g01866 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 354 518 - -
Tsu03g01866 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 5 359 - -
Tsu03g01866 520 MobiDBLite consensus disorder prediction 297 329 - -
Tsu03g01866 520 ProSiteProfiles Zinc finger C3H1-type profile. 202 229 IPR000571 GO:0046872
Tsu03g01866 520 SUPERFAMILY Ankyrin repeat 4 123 IPR036770 -
Tsu03g01866 520 Gene3D - 1 141 IPR036770 -
Tsu03g01866 520 SMART ANK_2a 52 82 IPR002110 GO:0005515
Tsu03g01866 520 SMART ANK_2a 87 119 IPR002110 GO:0005515
Tsu03g01866 520 Pfam Ankyrin repeats (3 copies) 29 119 IPR002110 GO:0005515
Tsu03g01866 520 SMART c3hfinal6 237 260 IPR000571 GO:0046872
Tsu03g01866 520 SMART c3hfinal6 202 228 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01866 Tsu-Chr3 19214220 19215790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01866 140 496 C2H2 Transcription Factor Family AT5G12850 37.727 5.12e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g01866 Ank_2 3.4e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01866 - - mtr:MTR_3g070880 778.089