Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01865 ATGAGTTCCGGTGAATTGGGTTGCATCTACGCCACTTTGATTCTCCACGATGATGGAATCGCAATCACCgCGGAGAAGATCAACACTCTTTTGAAGGCTGCTAATGTCACCGTTGAATCCTACTGGCCAAGCTTATTCGCTAAGCTTGCTCAGAGCAAGAACGTTGACGATCTTGTTTTGAACTCTGGCGCTGCTGCTGGTGCCGCCGTAGCAGCAGCCGCACCTGCTGCTGGTGGTGGTGGCGCAGCAGCCGCCGCACCTGCCGTTGAGGAGAAGAAGGAAGAAGCAAAggaagaaagtgatgatgacATGGGCtttagtttgtttgattaa 333 0.4775 MSSGELGCIYATLILHDDGIAITAEKINTLLKAANVTVESYWPSLFAKLAQSKNVDDLVLNSGAAAGAAVAAAAPAAGGGGAAAAAPAVEEKKEEAKEESDDDMGFSLFD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01865 110 MobiDBLite consensus disorder prediction 78 110 - -
Tsu03g01865 110 MobiDBLite consensus disorder prediction 88 104 - -
Tsu03g01865 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Tsu03g01865 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tsu03g01865 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Tsu03g01865 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 110 - -
Tsu03g01865 110 CDD Ribosomal_P1 5 61 - -
Tsu03g01865 110 Gene3D - 1 63 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01865 Tsu-Chr3 19209483 19210865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01865 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.752 5.67e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01865 K02942 - rcu:8269526 126.331