Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01864 ATGGAAAACAAGTTCCAAACCTCAGTTTTACTCGAATTATCAGCAACAGATGATATTCAAGCTTTCAAAAGGGAAGTGGAAGAAAAGGGTTGTGATGTAAATGAAGCAGGGTTTTGGTATTGTAGAAAATTAGGATCTAAGAAGATGTGCTATGAAAAGAGAACACCCCTTATGGTTGCTTCTTTGTTTGGAAGCAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTGTGCATGCCAATTGGTTGTGAAAATGTCACCGCGTTACACTGTGCTGTTTCCGGTGGCTCTGAATCGACTCTTGAGATTGTTAAGCTCTTGGTTGATGCTGGAGCAGATATTGATTGTCTTGATGAGATAATTAAGCAGAAATTATTGGTGGCTAATTCGAAAGAATTAGGAAGTGAGAAGAAAGAATATGTTGTAGATATATCATTGCCTGATATAAATAGTGGTGCTTTCGGAACAGATGAATTTAGAATGTATAGTTTCAAGGTAAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTGTGTCCATTTGTTCATCCAGGGGAAAATGCTAGGAGGAGAGACCCAAAGAAGTATCCTTATAGTTGTGTTCCGTGCCCCGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGTATGTGAGTATTCACATGGTGTTTTTGAGTCTTTGCTTCATCCTTCACAATACAGAACAAGGCTTTGTAAAGATGAGCTTAGGTGTTCTAGGAAAGTGTGTTTCTTTGCACATAAACCTGATGAGTTGCGCCCTTTGTATGCTTCAACTGGTTCAGCAATGCCTTCACAAGAATCCTTACCGGTTTCAAACGTTTCAACACCTGTTATGTCTCCCATGGTAGCTGGTTCATCTCCTAAGAGTGGAAACTTGTGGCagaataaaatcaatcaatctCCGCCTTCATTGCAACTTCCACGTAGCAACCAGCTGAAAAATACTTCGAGTGCAAAGGATTTGTATCAGGAAATGGCGCTTCTTGGTATAGAAAGAGCTACTAgtcaacaacagcaacaacagtTGATTGAAGAAATTCTTTCACTGCAACCTTCAACTCCTACTCAATTTCAATCAATGAGTAGGCTTCTGTTGAACGAAAACAGGAACATTAATGTTCAACCAAGTTATCCATTCAACAACGTTGTTTCCTCTCCTATGAGAAAATCATCTCCATTTGGATTTGATTCATCAGCTGCTATGGCTGCAGCAGTCATGAACTCAAGATCATCAGCCTTTGCAACACGAAGCCAAAGTTTTATGGACCGCAGTGCGGAGAGACACCATCTTGGTACTTCCAAACCTAATGGCAGGATGAACTCTGAACAATGGGATCATGTGACCAAGTTCCAAAAATCTGTTTCTTTTGGGTCTAGATATAATGGGGTAGCTGCCTCACCCTTGGCACGACAGCCAGAATATGCGGAACCGGATATCTCGTGGGTTCATTCACTTGTTAAAGACGTTTCTTCCGAGAGTTCTGAGATTTTTGGTGCTGAGAAGCAACATTATGATCTCTATAAACAAACATTATCACCATGGGCAAAGCAGATTGTAGCTTAA 1596 0.396 MENKFQTSVLLELSATDDIQAFKREVEEKGCDVNEAGFWYCRKLGSKKMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVCMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGADIDCLDEIIKQKLLVANSKELGSEKKEYVVDISLPDINSGAFGTDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPKKYPYSCVPCPEFRKGTCQKKDVCEYSHGVFESLLHPSQYRTRLCKDELRCSRKVCFFAHKPDELRPLYASTGSAMPSQESLPVSNVSTPVMSPMVAGSSPKSGNLWQNKINQSPPSLQLPRSNQLKNTSSAKDLYQEMALLGIERATSQQQQQQLIEEILSLQPSTPTQFQSMSRLLLNENRNINVQPSYPFNNVVSSPMRKSSPFGFDSSAAMAAAVMNSRSSAFATRSQSFMDRSAERHHLGTSKPNGRMNSEQWDHVTKFQKSVSFGSRYNGVAASPLARQPEYAEPDISWVHSLVKDVSSESSEIFGAEKQHYDLYKQTLSPWAKQIVA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01864 531 Pfam Ankyrin repeats (3 copies) 30 119 IPR002110 GO:0005515
Tsu03g01864 531 SUPERFAMILY Ankyrin repeat 5 123 IPR036770 -
Tsu03g01864 531 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Tsu03g01864 531 MobiDBLite consensus disorder prediction 293 321 - -
Tsu03g01864 531 Gene3D - 1 145 IPR036770 -
Tsu03g01864 531 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Tsu03g01864 531 SMART ANK_2a 52 82 IPR002110 GO:0005515
Tsu03g01864 531 SMART ANK_2a 87 119 IPR002110 GO:0005515
Tsu03g01864 531 ProSiteProfiles Zinc finger C3H1-type profile. 201 228 IPR000571 GO:0046872
Tsu03g01864 531 SMART c3hfinal6 236 259 IPR000571 GO:0046872
Tsu03g01864 531 SMART c3hfinal6 201 227 IPR000571 GO:0046872
Tsu03g01864 531 MobiDBLite consensus disorder prediction 427 452 - -
Tsu03g01864 531 PANTHER UNKEMPT FAMILY MEMBER 5 361 IPR045234 -
Tsu03g01864 531 PANTHER UNKEMPT FAMILY MEMBER 359 529 IPR045234 -
Tsu03g01864 531 Gene3D - 202 264 - -
Tsu03g01864 531 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 5 361 - -
Tsu03g01864 531 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 359 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01864 Tsu-Chr3 19204245 19206423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01864 8 502 C2H2 Transcription Factor Family AT5G12850 35.377 1.00e-106 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01864 - - mtr:MTR_3g070880 800.431