Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01828 ATGGAGGCGAAGGAACAAGATGTTTCATTGGGAGCTAACAAATTCCCAGAGAGACAACCAATTGGTATTGCAGCTCAAAGCCATGATGATGGAAAAGACTACAAAGAACCACCACCAGCACCTTTGTTTGAGCCTTCTGAACTCACTTCATGGTCTTTCTATAGAGCTGGGATAGCTGAGTTTGTGGCTACTTTTCTGTTTCTTTATATCACTATCTTGACTGTTATGGGTGTTAACAGATCTGATTCCAAGTGTAAATCTGTTGGTATTCAAGGGATTGCTTGGTCTTTTGGTGGCATGATCTTTGCCCTTGTTTACTGTACCGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTTTTGGCAAGGAAATTGTCTCTGACTAGAGCGGTGTTCTACATCGTGATGCAGACCCTTGGTGCTATCGCTGGTGCCGGTGTGGTTAAGGGTTTTGAGGGAAAGGAATTGTACGGTAAATTCCACGGCGGTGCCAACTTTGTTGCTCCAGGTTACACAAAAGGTGATGGACTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAACGTAGCGCCAGAGACTCGCATGTTCCTATTTTGGCACCATTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCAATTACTGGAACTGGTATCAACCCTGCTAGGAGTCTTGGTGCTGCAATTATCTTCAACAAGGATCTTGGTTGGGATGATCATTGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTAGCAGCCCTTTATCACACAGTTGTGATCAGAGCCATTCCTTTCAAATCAAGTTAA 870 0.454 MEAKEQDVSLGANKFPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSDSKCKSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQTLGAIAGAGVVKGFEGKELYGKFHGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHTVVIRAIPFKSS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01828 289 TIGRFAM MIP: MIP family channel proteins 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 288 IPR034294 -
Tsu03g01828 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Tsu03g01828 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g01828 289 PANTHER AQUAPORIN PIP 1-3 1 288 - -
Tsu03g01828 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Tsu03g01828 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01828 Tsu-Chr3 18838641 18840834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01828 1 289 Major Intrinsic Protein MIP AT4G23400 85.121 9.52e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01828 K09872 - gmx:100791447 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01828 03 18838641 18840834 Tsu03g01828 03 18838641 18840834 ECH
Tsu03g01828 03 18838641 18840834 Tsu05g03298 05 44337856 44340653 PCT