Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01826 ATGGGAGATGAAATCAAGGAAAATGTGAAGGATGGTGAATTACAAAAGCAAATCAAGTATAGAGGAGTAAGGGTAAGGCCATGGGGAAAATTTGCGGCAGAGATTCGAGATTCGGCTAGGCATGGAGCTCGAGTTTGGCTTGGTACATTTAATACTGCCGAGGAAGCTGCGAGAGCTTATGATCGTGCTGCTTTTGATATGAGAGGTTCTTCGGCTATTCTCAACTTTCCACATGAACATTTTCCATGCAATGTGGTTTGTAATTCTTCGAAgccatcttcttcttccaattcAACCTCATCATCTTCAAAGGTTAAATCAGAGCTTGGTCAACAAGTTATAGAGTTTGAGTATTTGGATGAAAAATTGTTAGATGAACTCTTGGATTGTGAGAATACCATCAATTACAACTGGTTCAAGTAG 423 0.3783 MGDEIKENVKDGELQKQIKYRGVRVRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFDMRGSSAILNFPHEHFPCNVVCNSSKPSSSSNSTSSSSKVKSELGQQVIEFEYLDEKLLDELLDCENTINYNWFK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01826 140 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Tsu03g01826 140 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Tsu03g01826 140 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Tsu03g01826 140 PANTHER DNA-BINDING DOMAIN 13 132 IPR044808 GO:0003700|GO:0009873
Tsu03g01826 140 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Tsu03g01826 140 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Tsu03g01826 140 PANTHER OS09G0571700 PROTEIN 13 132 - -
Tsu03g01826 140 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Tsu03g01826 140 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Tsu03g01826 140 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01826 Tsu-Chr3 18801774 18802196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01826 16 131 AP2-EREBP Transcription Factor Family AT3G23230 60.833 7.62e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu03g01826 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01826 - - mtr:MTR_7g096700 179.489