Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01825 ATGGCACAATCTTCTTCACACTATGCTTTAACAATATTTGCAATTGTTGTACTAAGCATCTTAGCCATTGTTTTCATATTTATCAACTACTTGATTCTTGTGACCAAATGTTGCTTAAATTGGCACCCTTTGAGATGGTTTTCCATTCTACCACCTCAACAAAATGAAGAGCCCTTCATAGCTTTCTCTCCAAGGGTTTGGAACCGCGGCGTCGATGAATCAGTCATCCAAGAAATCCCAACATTTCAATTCACAAAAAGAGGTGATAGTAATGATGATCATCAAACTGTAAAAGGTTGTGTTGTCTGTTTAAATTCTTTCCAAGAACAAGATATGTTAAAAGTACTTCCAAATTGTAGCCACCATTTTCACTTAGATTGCATTAACATTTGGCTTCAAACAAATGCTAATTGTCCTCTTTGTAGAACAAGCATTTCAGGTAACACGCTGTTTCCGACGAACCATATCATACCAGCACCAAGCTCTTCACCACAGGATTCTCAGTTACTCTCTAACATAGGTAGTGATGAAGATTATGTGGTCATTGAATTGTGGGGAGAAGGAGCGAATCGAGGAACAATGTCACATATGCAGCAAGAAAGAAACGAACCGATAGAAAGACTAGAATCACTGAGTAGAACTCATTCTACAACTAGGAAAATGGAAGAGGAGAAGAAAGTGGTGCAGTTGAAACCATGGAAATGCCACCATGGTTCCATAATGGGTGATGAGTGTATTGATGTTAGAAAGAAAGATGAACAATTTTCTTCTATTCAGCCTATTAGAAGATCTTTCTCATTAGATTCTGCAAGTGATAGAAAAGTTTACTTGGATGTTCAAGATATTATCCAACAGAATAATAGGCATCAAAGTAAGGATTGTGGTAATGAAGATTGTAATAGTAGCAGAGGTAGAAGATCATTCTTTCCATTTAGGTATGATAGAGTATAA 951 0.368 MAQSSSHYALTIFAIVVLSILAIVFIFINYLILVTKCCLNWHPLRWFSILPPQQNEEPFIAFSPRVWNRGVDESVIQEIPTFQFTKRGDSNDDHQTVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTLFPTNHIIPAPSSSPQDSQLLSNIGSDEDYVVIELWGEGANRGTMSHMQQERNEPIERLESLSRTHSTTRKMEEEKKVVQLKPWKCHHGSIMGDECIDVRKKDEQFSSIQPIRRSFSLDSASDRKVYLDVQDIIQQNNRHQSKDCGNEDCNSSRGRRSFFPFRYDRV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01825 316 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Tsu03g01825 316 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 315 - -
Tsu03g01825 316 CDD RING-H2_PA-TM-RING 100 142 - -
Tsu03g01825 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Tsu03g01825 316 SUPERFAMILY RING/U-box 78 147 - -
Tsu03g01825 316 SMART ring_2 100 141 IPR001841 -
Tsu03g01825 316 Pfam Ring finger domain 100 142 IPR001841 -
Tsu03g01825 316 PANTHER RING-H2 FINGER PROTEIN ATL16 3 315 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01825 Tsu-Chr3 18793534 18794484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01825 4 289 C3H Transcription Factor Family AT1G04360 43.046 2.13e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01825 K19041 - gmx:100809883 346.665