Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01816 ATGACTGGTTCTGGTTCTCCTTGTGGAGCTTGCAAATTCTTGAGAAGAAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAAGGTGCTACTCATTTTGCAGCTATTCATAAGGTTTTTGGTGCAAGTAATGTCTCAAAACTTCTTGCACACCTCCCTGTAAGTGATCGTTGCGAAGCTGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTAGCTTATATGAAAGAACAAGCAGCTCAAAGGTGTCTCAATACCTCACTCATTGAAAACCCTAATGAGAAGAACTTTGTAAAACCTAGTAATATTCTCCCTCAagatcttcaaattcaaatgGAAAATTATTCCTACATAAGTCCTCAATTTCTTCCCAACTTGTCCTCATCATCCACTACTAATCTCTCAACAACACATTATTATAATGGGAATAGTACCACCCTCATGGATCTAAACCCTATAATTAATGGAAGCTATGAAAATTCAGGAACTTTAGAAGAAAGCATTTCATCATTTTCTAACTTTGATGAGAGATGTAATAACTCAATGTCCTATGAAAACATGCAAAGGCAGTGGAACTTTCATGAAGTGCATAACCTTCAGTAA 690 0.3609 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYMKEQAAQRCLNTSLIENPNEKNFVKPSNILPQDLQIQMENYSYISPQFLPNLSSSSTTNLSTTHYYNGNSTTLMDLNPIINGSYENSGTLEESISSFSNFDERCNNSMSYENMQRQWNFHEVHNLQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01816 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 223 - -
Tsu03g01816 229 Coils Coil 87 107 - -
Tsu03g01816 229 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Tsu03g01816 229 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Tsu03g01816 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01816 Tsu-Chr3 18691385 18692537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01816 7 122 AS2 family AT3G58190 80.508 4.29e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g01816 LOB 6.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01816 K13945 - gmx:100776678 313.923