Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01815 atgGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGTAAGTTCTTAAGAAGAAAATGTGCACCTGATTGcatttttgcaccttatttttGCTCAGAACAAGGTCCTGCAAGATTTGCAGCTATTCATAAAGTTTTTGGTGCTAGCAATGTTTCTAAGTTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTTACAATTGCTTATGAAGCTCAAGCTCGTATTAGAGACCCTGTTTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATACAAGTGAAATCTCAGCTGTCACAGAACATAGACAATAATCAATGGACATGGAAtagtaatactaataataatgttGCTACAACACAACCAATGAATTATCCATTTTGTCCAACTTATATGAATCCTATATCTCCTCAAAGCTCCCTAGAGTCATCAATTGATCATAGTAGCAGCATGAATGATGGAATTATGAGCATGCAAGATGTACAAAGTAGTAGAGAAGATTTCTCATTCCAAGCTTGTAATAATTCTAAGAAAAGAATGTCATATaacaataatcatcatcatgACTTGGGAGAGTTGCAAGAGATTGCACTTAGGATGATGAGGAATTTTGACTAG 669 0.3483 MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLIQVKSQLSQNIDNNQWTWNSNTNNNVATTQPMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGIMSMQDVQSSREDFSFQACNNSKKRMSYNNNHHHDLGELQEIALRMMRNFD 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01815 222 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Tsu03g01815 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 219 - -
Tsu03g01815 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 219 - -
Tsu03g01815 222 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01815 Tsu-Chr3 18675485 18676650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01815 1 220 AS2 family AT2G42430 54.217 1.78e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g01815 LOB 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01815 K13944 - gmx:100801508 314.694