Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01813 ATGTCTGCTTCTCAGAGTAATGGCAAGAACCCAATGGGAGCTGAAGATCCTGCCGTATACAGTTTTTTAAACAACCTCGACAATGCAACAAATGAAAGTATTATAAAAGTGCACATTGCTATAATGTGGGACAATCTGCATGTGTTTAACAAAAAAGAATTGATTAGTATTGACATGGTGTTGATTGATCAAGAGTCCAATTGTATCCATGCAACGCTGCCTAAGGAATTTGCAGCTGccttcaagaaaaaaaaaatgcaggaaGGAAGAATATATGTCGTCACGAAATTAGGGGTGTCGGccaataaaaaaagatatgCGGTGGTTGAACACAACTCTTCAATGTTGCAGTTCAATGATAACACCAAATTCGATGAGGAGTATGATGATGGCAGCATTCCTCTCCATGCTTTTGAATTTGTCAATTATGCACAAATGAAGGCTCGAATTGACAAACCTATGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAACTGCTGGTGGTAGAGTGGATATGTTGTCTATTCAGTTGAAAGATATAagtGGCAACACAATCAACGTTGCAATGTGGGGTGAGTATGCTACCATTTTTGAGGACACCCTGAAGAGGAATTTGTGTGATGCTCCTGATCCAAATGTTGCAGTCATCACATCCACTACGGCTAAGAGATATCAGCGTAACATATTCTGGAGTGCCAACAATCTGCATTCATCTGAGAATGCATGCCTCACGAAATCTACTGTGTTGGACAAGACAAGGACTATATCTGAAATTTTGCAGTTGGCTGTATCAGGGAATAATGCGGTTAGCAACTTCATCTGCTGTGTTGCAACTGTCGACGAGATTTTGGATAAAAATGGATGGTATTATGTCTCATGTTCTACCTGCAAAAAAAGTGCTTCTGCTACTAAAACAAACTTCAAGTGTGATACCTGTGGGGAAAGTGTGGATTACCCCGTTACAAGGTATCGATTGGAGCTTCGTGTCAGTGACGCTTCAGATTCTACTATATTTGTATTGTTTGATGAACTTGCTGAGCAAGTTGCACAAGTGAAATTGGTTGATCTACTCTCAGCTTTAGATAAGGAAACTGACAATGACTTGGCAATACCCCATCAACTCCAAAAGATCATTGGAACAACACATGTGTTCCAAATTAAGATTAAATCTTACTTTGAGGGCCATGGAAGACAGAGTTTCATAGTTGATAGAATTGTGAGGCCTAAAGTGAAGGTTGAGGACGATGACAAGCTTGGCACCAGTGATCCTCCAAGAATAGTGACGCCTCAATTACGGCAAAAGCGGAGAAGGTTACATTATGAAGAGGAGTCTGACGATGTGGAGAAGGAAAAGATTGGATCAGATTTAGAGGAGTGA 1401 0.3911 MSASQSNGKNPMGAEDPAVYSFLNNLDNATNESIIKVHIAIMWDNLHVFNKKELISIDMVLIDQESNCIHATLPKEFAAAFKKKKMQEGRIYVVTKLGVSANKKRYAVVEHNSSMLQFNDNTKFDEEYDDGSIPLHAFEFVNYAQMKARIDKPMLTDIIGVIVDVNPIEERKTAGGRVDMLSIQLKDISGNTINVAMWGEYATIFEDTLKRNLCDAPDPNVAVITSTTAKRYQRNIFWSANNLHSSENACLTKSTVLDKTRTISEILQLAVSGNNAVSNFICCVATVDEILDKNGWYYVSCSTCKKSASATKTNFKCDTCGESVDYPVTRYRLELRVSDASDSTIFVLFDELAEQVAQVKLVDLLSALDKETDNDLAIPHQLQKIIGTTHVFQIKIKSYFEGHGRQSFIVDRIVRPKVKVEDDDKLGTSDPPRIVTPQLRQKRRRLHYEEESDDVEKEKIGSDLEE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01813 466 MobiDBLite consensus disorder prediction 421 466 - -
Tsu03g01813 466 PANTHER REPLICATION FACTOR A 1, RFA1 262 432 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu03g01813 466 CDD RPA1_DBD_C 263 413 IPR013955 -
Tsu03g01813 466 PANTHER REPLICATION FACTOR A 1, RFA1 20 231 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu03g01813 466 CDD RPA1_DBD_B_like 157 237 - -
Tsu03g01813 466 MobiDBLite consensus disorder prediction 442 466 - -
Tsu03g01813 466 PANTHER BNAC01G35430D PROTEIN 20 231 - -
Tsu03g01813 466 SUPERFAMILY Nucleic acid-binding proteins 260 419 IPR012340 -
Tsu03g01813 466 Gene3D - 148 248 IPR012340 -
Tsu03g01813 466 PANTHER BNAC01G35430D PROTEIN 262 432 - -
Tsu03g01813 466 SUPERFAMILY Nucleic acid-binding proteins 23 129 IPR012340 -
Tsu03g01813 466 SUPERFAMILY Nucleic acid-binding proteins 138 240 IPR012340 -
Tsu03g01813 466 CDD RPA1_DBD_A_like 35 124 - -
Tsu03g01813 466 Gene3D - 249 425 IPR012340 -
Tsu03g01813 466 Pfam Replication protein A OB domain 150 207 IPR031657 -
Tsu03g01813 466 Gene3D - 20 126 IPR012340 -
Tsu03g01813 466 Pfam Replication factor-A C terminal domain 281 412 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01813 Tsu-Chr3 18654088 18656636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01813 61 397 Core DNA Replication Machinery Family AT4G19130 22.102 5.25e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01813 - - mtr:MTR_4g070090 384.03