Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01811 atggggaaaagaaaaagaagaaaagaagaaattgCTGAAGATTGTTGCTTTATGTGCAAGGATGGTGGTGAAATGAGGGTCTGTGATTTTAAGGATTGCCTTAAAACCTATCATGCTAAATGCGTGGAAAAAGATGATTCCTTTTTGACGAACGACGATAATTGGTGTTGTGGTTCCCATTATTGCTACCAATGCAGTAGATCATCGAAGTTTATGTGTTTGTGCTGCACAACAGCTTTTTGTGGAAAATGCTACTATGGGGCTGAATTTGCTACTGTCAAAGGAAACAAAGGATTTTGTAGGCACTGCTCAAAACTTGCATTTCTTATTGAGAACAACGCTGACATTGATTCTGATGGAGAATTTATAGATATGAAAGATCGAAGATTCTATGAAAGTTACTTTTTAGattattatgaaaatatcaaaataaaagaaggGCTGAATACTCAGCATGTTCATATTGCCTATGACACcattaaaaatggaaaaaacaaGCGTGACTTGGATTCATATGAAATAAGTGAGGGGGAAGATGATAGTGGTGAGTCAGATGGGAGTGAATTTATGGGTTCTGACTGTGACCTGGATTACACAGCAGGGGGTCAATCCGCCAGGAGAAAGAAGACGTGCatgaaaaagataaaatcaGTGAAAGGATCAAAAGCAGTGAAAGATAAGAAaacggattttgttggatggGGTTCAAGAAGCCTCATGTATTTTCTTAAAAGTATTGGTAGAGACACGACCGAAGAGTTTTCTGAACTTGATGTTGCTTCGATCATCATTGAGTACTGCCATGAAAAAAAGCTTCTTGACCCcataaaaaggaaaagaataaTATGTGATGCAAATTTAAAGGCTTTACTACGGAGAAAATCCGTGAACAGAAACAACATACAAAACCTTCTAGCATCACATTTTGCTGAGAATGCTGAGGAAACTGATGATGCAATCAGTGGTTcagaagaaatggaaaatgtaGAGGCAATCAATTTTCCAAAACAGAGAAATCTGAACCCAATTACAAAATCTTGTCAGAATGTAGATTTTGAAGAGCTTCCAAGTGGATTTGCAGCCATAATTAGCTCAAACCTAAAACTTGTCTACTTGAAGAAGAGCTTAATTGTGGAGCTTTTGAAGCAACTAGAAACCTTTGATGGTAAAGTGTTGGGAAGTTTTGTTAGAACCAAATCTGACCCAAATGACTATTTACAGAAGAATTCCCATCTGCTCTTACAAGTAAAAGGGATTAACAGATCAAAGAAAGACGAACTCCACCAAGAAATTCTGCTCCGGCTTTCTAATGTGCCAAAAGATGTACCTATCAGCAAAATTTCTGATGATGACTTTTCTGAGGAAGAATGTCAAGATTTGTATCAGAGAATGACAAATGGTCTGCTCAAAAAGCCAACTATACTGGAGCTTGAGCAGAAAGCCAGAACTCTGCATGAAGATAGGATGAAACATTGGATCTCAAGGGAGATAACATTGTTACGAAATCGTATTGATCTGGCCAATGAAAAGGGATGGAGGAGAGAATATCCTTTCatgataattttgttaatgttacctcatattaaaagcTACAGATCAAAATATTGTGAATTGTTAATTTGTTCCCTAATTTAA 1635 0.337 MGKRKRRKEEIAEDCCFMCKDGGEMRVCDFKDCLKTYHAKCVEKDDSFLTNDDNWCCGSHYCYQCSRSSKFMCLCCTTAFCGKCYYGAEFATVKGNKGFCRHCSKLAFLIENNADIDSDGEFIDMKDRRFYESYFLDYYENIKIKEGLNTQHVHIAYDTIKNGKNKRDLDSYEISEGEDDSGESDGSEFMGSDCDLDYTAGGQSARRKKTCMKKIKSVKGSKAVKDKKTDFVGWGSRSLMYFLKSIGRDTTEEFSELDVASIIIEYCHEKKLLDPIKRKRIICDANLKALLRRKSVNRNNIQNLLASHFAENAEETDDAISGSEEMENVEAINFPKQRNLNPITKSCQNVDFEELPSGFAAIISSNLKLVYLKKSLIVELLKQLETFDGKVLGSFVRTKSDPNDYLQKNSHLLLQVKGINRSKKDELHQEILLRLSNVPKDVPISKISDDDFSEEECQDLYQRMTNGLLKKPTILELEQKARTLHEDRMKHWISREITLLRNRIDLANEKGWRREYPFMIILLMLPHIKSYRSKYCELLICSLI 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01811 544 Pfam Plus-3 domain 366 464 IPR004343 GO:0003677
Tsu03g01811 544 Pfam SWIB/MDM2 domain 238 309 IPR003121 -
Tsu03g01811 544 ProSiteProfiles Plus3 domain profile. 361 489 IPR004343 GO:0003677
Tsu03g01811 544 PANTHER GYF DOMAIN PROTEIN 1 518 - -
Tsu03g01811 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 107 IPR013083 -
Tsu03g01811 544 CDD PHD5_NSD 16 60 - -
Tsu03g01811 544 SMART rtf1 361 466 IPR004343 GO:0003677
Tsu03g01811 544 PANTHER OS01G0884500 PROTEIN 1 518 IPR045894 -
Tsu03g01811 544 Gene3D - 363 486 IPR036128 GO:0003677
Tsu03g01811 544 ProSiteProfiles SWIB/MDM2 domain profile. 231 311 IPR003121 -
Tsu03g01811 544 CDD SWIB-MDM2_like 251 309 - -
Tsu03g01811 544 SUPERFAMILY Plus3-like 362 486 IPR036128 GO:0003677
Tsu03g01811 544 SUPERFAMILY SWIB/MDM2 domain 227 314 IPR036885 -
Tsu03g01811 544 Gene3D SWIB/MDM2 domain 220 320 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01811 Tsu-Chr3 18639343 18646075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01811 13 87 PHD Transcription Factor Family AT3G14980 32.530 3.20e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Tsu03g01811 Plus-3 4.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01811 - - lang:109330251 642.114