Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01809 ATGGCGTCAACCAATCACACAGTGTTGCAATTCTCTTCGTCTTCTCAGAGCTTATCCGCTAAGGTTCATCCTCTTGTTGTCTTCAACATCTGTGACTGTTACGTTCGTCGCCCTGATCAAGCCGAACGCGTCATTGGAACGCTTCTCGGATCTGTTCTTCCTGATGGAACCGTAGATATCCGTAATTCATATGCCGTTCCTCACAGCGAGTCTGCCGATCAGGTTGCGTTGGACATAGAGTATCACCATAATATGTTATTGTCCCACCAAAAAGTGAATCAAAAGGAAGTCATAGTTGGATGGTATTCAACTGGACATGGAGTAACCGGTGGAAGTGCATTGATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATTCATTTGACTGTTGACACAGGATTCACAACTGGAGGGGGTACCATAAAAGCTTTTGTGACAAACAATTTATCTCTTGGAGATAGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTTGAAGCGGAGCGAGTTGGATTTGATATCCTAAAGGCAACCACCGTCGAAAAAATCCCCTCTGATTTAGAAGGCATGGAAGCATCAATGGAACATCTGCTAGCTTTGATTGATGACATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTCGCACCAGACAATAAAATTGGGGAATTTATTTCAGATGCAGTAGGTTCTCTTCCCAAATTGCCTCCATCAGATTTTGATAAGCTTATCAATGACAGCTTGCAGGATCACTTGCTCATGCTATATTTATCTAGCATCACAAGAACTCAACTTAGCTTGGCCGAAAAACTGAACACGGCTGCTCAGATTTTGTAA 858 0.4277 MASTNHTVLQFSSSSQSLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHSESADQVALDIEYHHNMLLSHQKVNQKEVIVGWYSTGHGVTGGSALIHEFYSREVPNPIHLTVDTGFTTGGGTIKAFVTNNLSLGDRQIAAQFQEIPLDLRMVEAERVGFDILKATTVEKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRVAPDNKIGEFISDAVGSLPKLPPSDFDKLINDSLQDHLLMLYLSSITRTQLSLAEKLNTAAQIL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01809 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Tsu03g01809 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Tsu03g01809 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 13 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu03g01809 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu03g01809 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 284 - -
Tsu03g01809 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu03g01809 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu03g01809 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Tsu03g01809 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 123 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01809 Tsu-Chr3 18629107 18632793 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01809 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 75.601 7.81e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01809 K03249 - gmx:100811797 481.87