Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01806 ATGGATGTGATAAAAACTCAACAAATCTCATCTCGATCGATCGAGAAAGTGGTGGTTCATCCACTAGTGTTGCTCAGTATCGTCGATAACTACAACAGAGTCGCAAAAGATACACGTAAACGTGTCGTCGGCGTTTTGCTCGGTTCAACATTCAAAGGCACCGTTGATGTTTCCAATAGCTATGCTGTGCCCTTTGAAGAAGATGACAAGGACCCTAGCATTTGGTTTCTCGACCACAATTACCATGAAGCAATGTTTTCCATGTTTAAGAGAATAAATGCCAAGGAGCATGTGGTGGGGTGGTATAGCACTGGTCCAAAACTGCGTGAAAATGACCTCGACATTCATGGGTTATTTAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTTGAACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTATGCTGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAAGTCTTTGTCCATGTGCAATCAGAGATTGCTGCTCATGAGGTTGAGGAAATAGGAGTGGAACACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACCCTCGCAACTgagGTGAGTGGAAAGCTTACAGCCTTGAAAGGTTTGGATGCAAGACTTAAAGAGATAAGGAGTTACCTAGATCTTGTTATTGATGAAAAGCTTCCCTTAAACCATGAGATCCTATACCATCTACAGGATGTGTTCAACCTGCTACCAAATCTTAATGTCACTGATCTTATCAAGGCTTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTTTCATCCCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCAGAAGACTCAAAACCAGCACCAGTATCAAGTGCAGCTGCATAA 930 0.4086 MDVIKTQQISSRSIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHEAMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKPAPVSSAAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01806 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Tsu03g01806 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu03g01806 309 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 1 309 - -
Tsu03g01806 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 309 - -
Tsu03g01806 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Tsu03g01806 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Tsu03g01806 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu03g01806 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01806 Tsu-Chr3 18598726 18602595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01806 10 248 Eukaryotic Initiation Factors Gene Family AT2G39990 28.395 1.25e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01806 K03038 - gmx:100790393 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01806 03 18598726 18602595 Tsu05g03297 05 44328636 44333001 ECH
Tsu03g01806 03 18598726 18602595 Tsu03g01806 03 18598726 18602595 ECH