Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01753 ATGGCTCCTCCTTCAGATATCAATCAACTTTCTCATCCTTGCATATATgGTGATTTTTCTTCTGCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGGCCAAATAGAGGAAGGGGTGGTGGTCATCATCTACAACAACCTATAGACGAAAACATGTCTTGGCGAGCTCCACCGAGATCCTTGGATAACCGTGGTAGATCTAAGAAAGAGGAAGAGGATTTGAACAATGCAATTGCACTTTCTTTAAGTGAAGATTTAAAGATACCAGCAGGATATAGATGGCGGACGGGAGCTGATGATGATTACGCAAAGCCACTTCAGGATCGCACACACTCATCTCTACACCCTCCATATGCCCCTTTACCGATTTATCCCCGGGGATACAGTATGCCATCGCATGTCAGAATATGTGGAGGGTGCAACAAGGAGATACACTATGGTAATTGTTTGGGAGTTGAAAATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCATCAACCTATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTATTGTTTTAAAGAATTGAGCCATCCTAAATGTGAAGTTTGCCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCATCCCTACTGGAACCAAAAGTATTGTCCATCTCACGAATATGATAATACAGCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCTCGGGGCGAACGGTATTTTAGATTAGATGATGGACGAATTTTGTGCTTCGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTAGAGACTATTATGAAGGAATGAATATGAGAATCGATCAACAAATCCCTATGCTTCTAGTCGGCAGAGAAGCACTTAATGAAGCAATTGTTGGAGAGAAGAATGGTTTCCATCACCTACCAGAAACAAGAGGCTTATGTCTTTCTGAAGAGCAGACCGTCACCAGCGTACATAGATGGTCAAAAATTGGGGGCCATCGATTAATAGGGATGCGAAGTCAACCACAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGAGCTATCCTTGCCCATGAGTTGATGCACGGTTGGTTACGCCTCAAAGGTTACCGCAACCTTGATCCTGCAGTAGAGGAGGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAAGTCATGTCTGGTTCTAGAACCATGCCATCAACATCAGCAGCTTCTTCCTCGTCCTCATCCTCATCCTCCTCCTATTCATCAAAGAAAGGTGTGAAATCTAAAGTTGAGAATAAACTAGGTGAATTCTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCAGCTAATGCAGCTGTTAATAAATACGGTTTACGTAGTACTCTCGACCATATTCGTTTGACTGGTCAATTCCCACTGTAA 1539 0.4191 MAPPSDINQLSHPCIYGDFSSAYSERKSGFMKWFGKIFKIGPNRGRGGGHHLQQPIDENMSWRAPPRSLDNRGRSKKEEEDLNNAIALSLSEDLKIPAGYRWRTGADDDYAKPLQDRTHSSLHPPYAPLPIYPRGYSMPSHVRICGGCNKEIHYGNCLGVENSYFHPDCFRCHSCHQPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWSKIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSTSAASSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRSTLDHIRLTGQFPL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01753 512 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Tsu03g01753 512 CDD LIM 172 227 - -
Tsu03g01753 512 CDD LIM_DA1 145 197 - -
Tsu03g01753 512 Gene3D Cysteine Rich Protein 135 203 - -
Tsu03g01753 512 MobiDBLite consensus disorder prediction 433 454 - -
Tsu03g01753 512 MobiDBLite consensus disorder prediction 44 78 - -
Tsu03g01753 512 Pfam Protein DA1 294 507 IPR022087 -
Tsu03g01753 512 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Tsu03g01753 512 PANTHER PROTEIN DA1-RELATED 2 20 512 IPR045218 -
Tsu03g01753 512 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Tsu03g01753 512 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 512 - -
Tsu03g01753 512 Pfam LIM domain 145 198 IPR001781 -
Tsu03g01753 512 SMART lim_4 144 196 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01753 Tsu-Chr3 17945877 17950454 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu03g01753 DA1-like 4.9e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01753 - - gmx:100798829 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01753 03 17945877 17950454 Tsu03g01753 03 17945877 17950454 ECH
Tsu03g01753 03 17945877 17950454 Tsu05g03254 05 43848588 43852530 PCT