Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01738 ATGGCTGGAATGTGCTGTGGTGTTGTTGGTGAAGGAGACTCTCCGGCGAGTTCACGTCCATCATCCAGACGCCGGAATTTAGACTTACTACCTTTCAAATACATCGCTGACATGGCGTCCGGTACTTCACGGAAACGCCGCCAAGCGGATCTCTGTAAGAGTAGCGATTTTGAAAGCTGTGATGACTCAAGCGATGACAAAAGTAAGAAGAACAAAACGGAAGAATCCAAAGTAAGCGATTCGGAAGATAAATCTTCAACGGAAGGTAATTTTGAACATGGAGAGTTTCCAAAGTTTGGTGTTACTTCAGTTTGTGGTAGAAGAAGAGATATGGAAGATTCCGTTTCAGTTAAACCTTCTTTCTCTTCACAAGAACCGTTTCACTACTTCGGTGTTTTTGACGGTCACGGTTGCTCTCACGTTGCAACTATGTGTAAGGAACGGCTTCACGAAATCGTGAAGGAAGAAATCAACGAATCACAAGAGAATTTCGAGTGGAGTAACACTATGCAACAAGGATTTGCTCGCATGGACGATGAAGTTCAGAGATGGAATAGTAGCAGCCAAACGGTTGCTTGCAGATGCGAGCTTCAAACTCCACACTGCGACGCCGTCGGATCCACCGCCGTTGTCGCCGTTGTAACACCGGACAAAATCATCGTCTCAAACTGCGGTGACTCGCGCGCTGTTCTCTGCCGTAACGGCGTCGCCATCCCACTGTCCTCCGATCACAaaCCGGATCGACCCGATGAGCTGCTCCGTGTTCAAGCGGCAGGAGGGCGCGTGATCTACTGGGATGGTCCAAGAGTGCTTGGTGTACTCGCCATGTCTAGAGCCATAGGCGACAACTATTTAAAGCCATATGTGATATCAGAACCCGAGGTAACGGTAACGGAGAGAAAAGACGAAGATGAATGTTTAATTCTAGCGAGTGATGGATTATGGGATGTTGTTTCAAACGACACCGCATGTGGTGTTGTTAGGATGTGTTTGAAGGCACAGAAGCTACCGTCGCCACCCGGTTCTCCGGCTAACGACGTGACAACAGATGGTTCCGATCGGGCATGTTCTGATGCGTCAATTTTGTTGACTAAGTTGGCTTTGGCAAGACATAGTTCGGATAATGTTAGTGTGGTGGTGATTGATTTAAGGAGAGATCAACGACAATTATCAAATTccaacaataattaa 1191 0.4677 MAGMCCGVVGEGDSPASSRPSSRRRNLDLLPFKYIADMASGTSRKRRQADLCKSSDFESCDDSSDDKSKKNKTEESKVSDSEDKSSTEGNFEHGEFPKFGVTSVCGRRRDMEDSVSVKPSFSSQEPFHYFGVFDGHGCSHVATMCKERLHEIVKEEINESQENFEWSNTMQQGFARMDDEVQRWNSSSQTVACRCELQTPHCDAVGSTAVVAVVTPDKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERKDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKLPSPPGSPANDVTTDGSDRACSDASILLTKLALARHSSDNVSVVVIDLRRDQRQLSNSNNN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01738 396 CDD PP2Cc 98 383 IPR001932 -
Tsu03g01738 396 MobiDBLite consensus disorder prediction 1 25 - -
Tsu03g01738 396 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 27 388 - -
Tsu03g01738 396 SMART PP2C_4 82 381 IPR001932 -
Tsu03g01738 396 ProSiteProfiles PPM-type phosphatase domain profile. 98 383 IPR001932 -
Tsu03g01738 396 MobiDBLite consensus disorder prediction 43 91 - -
Tsu03g01738 396 Gene3D - 93 392 IPR036457 -
Tsu03g01738 396 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Tsu03g01738 396 SUPERFAMILY PP2C-like 96 384 IPR036457 -
Tsu03g01738 396 SMART PP2C_SIG_2 110 383 IPR001932 -
Tsu03g01738 396 Pfam Protein phosphatase 2C 99 375 IPR001932 -
Tsu03g01738 396 PANTHER ALPHABET, ISOFORM E-RELATED 27 388 - -
Tsu03g01738 396 MobiDBLite consensus disorder prediction 41 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01738 Tsu-Chr3 17728817 17730957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01738 1 358 PP2C-type Phosphatase Gene Family AT3G11410 59.151 3.84e-143 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01738 K14497 - gmx:100776356 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01738 03 17728817 17730957 Tsu05g03237 05 43667427 43669435 ECH
Tsu03g01738 03 17728817 17730957 Tsu03g01738 03 17728817 17730957 ECH
Tsu03g01738 03 17728817 17730957 Tsu05g03237 05 43667427 43669435 PCT