Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01727 ATGGAGGAATCTCAAAATTTGTTGTGGATGAAAAGGAAACAAGTCTTGAACTCACATATTGAAGCAGTGCCATCATTTGAAGTTGGAGCTATGAACAACAATAAGTCTTGGGAGGAAAAAGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCTCCAAGATCTTACTCATGTCACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAAACTCAAACAAAGTCTTGGTCACCATAATGAATTAGACCTTCATTCTCTTCATAAAAATCATTTTACAACAAGCAGAGTTAATCCATCATCTTGGCCATCAACTATATCAACACAAGAAAACTATTTTGAGCAAAACATGTCTACAATTAGATGGGGGAATTATAATCACATGGTGTCTCATGATTCTGAACCAAAAGAGCTACTAGTTAATGCAAGGGAACAAATTTTCAAAGGTTATAGTTGCAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAAATTACTAACTGATGATTTTTGTGGGGACAAAGGCAACACTTATAAAAAACCAAGGACAAATTCTATTTTTCATCACAAGCCATGTTTGAATGATAGATGTTTAACTTTTCAGTCTGCAGAGTTTGTGAATATTGGAATTAAGCCAGGAATGGAAGACTTGGATCTTGAACTCAGACTAGGGAAATTAACACAGAAAGTTTAA 768 0.3503 MEESQNLLWMKRKQVLNSHIEAVPSFEVGAMNNNKSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRAKLKQSLGHHNELDLHSLHKNHFTTSRVNPSSWPSTISTQENYFEQNMSTIRWGNYNHMVSHDSEPKELLVNAREQIFKGYSCNDYVETSLSMGQNNSMFGQKLLTDDFCGDKGNTYKKPRTNSIFHHKPCLNDRCLTFQSAEFVNIGIKPGMEDLDLELRLGKLTQKV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01727 255 Pfam C2H2-type zinc finger 60 84 - -
Tsu03g01727 255 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Tsu03g01727 255 PANTHER OS07G0101800 PROTEIN 1 255 - -
Tsu03g01727 255 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Tsu03g01727 255 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 255 - -
Tsu03g01727 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01727 Tsu-Chr3 17631710 17632680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01727 32 92 C2H2 Transcription Factor Family AT2G37740 72.131 2.05e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g01727 zf-C2H2_6 3.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01727 - - gmx:100788082 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01727 03 17631710 17632680 Tsu05g03234 05 43627552 43628262 PCT