Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01720 ATGGCAAATCGTTGGTGGAGTTCTGATAATGCTGCAATGAGTCAGAGAGAATCAATGCCGccttcatcaccatcatcactTCAACATCTCAAAAGAGAACAagaaaacaacaacacaaactCAACTCCAACTAatagcagcagcaacaacaacaacaacaatgaagaagatgaaaacaacaacaatgatGAACAAAACCCATCAGAGCCAGGAAGTAGTAGCGGTGGTCGGAGGCCACGTGGCAGACCACCAGGTTCTAAGAACAAACCAAAACCTCCCATTGTTATAACAAAAGAATCACCTAATGCGCTTCGAAGTCATGTGTTGGAAATTAGCAGTGGTAGTGATGTGGCAGAGAGTATAGCAACTTTTGCTAACCGGCGACACCGCGGTGTGTCGGTTTTAAGTGGGAGTGGCATTGTTGCTAATGTGACACTTAGGCAACCTGCTGCTCCTGGTGGTGTTATTACTCTTCATGGTAGATTCGAGATACTTTCGCTTTCGGGTGCTTTTTTGCCTTCGCCTTCTCCGGCTGGTGCTACTGGATTGACTGTTTATTTAGCTGGTGGTCAGGGGCAGGTTGTTGGTGGTGCTGTGGCTGGTTCTTTGGTTGCTTCTGGACCTGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGACTACCATTGGAAGATGAACAAGGTGGTGAACAAGAGGAAATGCAagttcaacaacaacaacagcagcaacaacaatctGGTGTGAATTCAGCAACGGTTGCGGTTACTTCTTCTCAAGGTTTGGAATTAGGtgaacaacatcaacaacaggTTTCAATGCCTATGTATAATTTGCCTCCAAATTTGATGCATAATGGTACTCAAATGTCTCATGATGTGTTTTGGGGTCCTCCGCCTCCTCGTCCACCTCCTCCTTCTTTCTGA 933 0.388 MANRWWSSDNAAMSQRESMPPSSPSSLQHLKREQENNNTNSTPTNSSSNNNNNNEEDENNNNDEQNPSEPGSSSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPAGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGGEQEEMQVQQQQQQQQQSGVNSATVAVTSSQGLELGEQHQQQVSMPMYNLPPNLMHNGTQMSHDVFWGPPPPRPPPPSF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01720 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 217 IPR005175 -
Tsu03g01720 310 CDD DUF296 105 187 IPR005175 -
Tsu03g01720 310 MobiDBLite consensus disorder prediction 1 101 - -
Tsu03g01720 310 MobiDBLite consensus disorder prediction 235 257 - -
Tsu03g01720 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 307 - -
Tsu03g01720 310 PIRSF ESCAROLA 13 310 IPR014476 GO:0003680
Tsu03g01720 310 MobiDBLite consensus disorder prediction 228 257 - -
Tsu03g01720 310 MobiDBLite consensus disorder prediction 1 56 - -
Tsu03g01720 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 229 - -
Tsu03g01720 310 Gene3D - 104 248 - -
Tsu03g01720 310 ProSiteProfiles PPC domain profile profile. 101 239 IPR005175 -
Tsu03g01720 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 307 IPR014476 GO:0003680
Tsu03g01720 310 MobiDBLite consensus disorder prediction 278 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01720 Tsu-Chr3 17553451 17554735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01720 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.108 4.67e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01720 - - gmx:100791954 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01720 03 17553451 17554735 Tsu03g01720 03 17553451 17554735 ECH
Tsu03g01720 03 17553451 17554735 Tsu05g03232 05 43594117 43601993 PCT