Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01714 ATGGGTAAAGAGGAAAGAAACAGCCCAAACCTCGACTCCTTCCACTTATCTGGCAAGCCAAATATTTCCGATGTGGTTGATGTTTCAAAAATAGTTAAGAGAAAACTTATTTGGTTTGCTCGATTTAAAGACAAACTAAAATGTTCGGCTCTTTTGATCAATGATGTTGGAACACAGGCTGTTAGTAAATTAGAATGTCCAAATTGTAATAGGATGATTTGTGCACAATGTAAGGTTCGATGGCATGAAGGAATCAAATGCAGCAAGTTCAAGAAACTGAACCGAGATGATAAGGCGAAAGATGTTATGCTGGAGAACATTGCGAAAAATACGAGGTGGAGGCAATGTCCAAAGTGCAGATTTTATGTTACCAAATCTGAGAGCTCCAACATCATGAAATGCAGATGTGGATGTGTCTTCTCTATTGGCAAGTGCAATTGTTATAAGAGGAATCTCAACTCTGATCAACGAACTTTCATCTCTTGGGCTCAACAGCTGAATGATATTGACCTCAAAGAACTGATTGATATTTACTTCAAAAACTTGAATGATATTCTTGGGAGTTTTCGTGAGGAAAAGTGA 582 0.378 MGKEERNSPNLDSFHLSGKPNISDVVDVSKIVKRKLIWFARFKDKLKCSALLINDVGTQAVSKLECPNCNRMICAQCKVRWHEGIKCSKFKKLNRDDKAKDVMLENIAKNTRWRQCPKCRFYVTKSESSNIMKCRCGCVFSIGKCNCYKRNLNSDQRTFISWAQQLNDIDLKELIDIYFKNLNDILGSFREEK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01714 193 SUPERFAMILY RING/U-box 100 140 - -
Tsu03g01714 193 Gene3D - 85 157 - -
Tsu03g01714 193 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 42 145 - -
Tsu03g01714 193 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 42 145 IPR031127 GO:0004842|GO:0016567
Tsu03g01714 193 Pfam IBR domain, a half RING-finger domain 47 87 IPR002867 -
Tsu03g01714 193 SUPERFAMILY RING/U-box 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01714 Tsu-Chr3 17513240 17517045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01714 66 135 C3H Transcription Factor Family AT2G19610 31.429 2.20e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01714 K11975 - mnt:21402499 129.798