Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01712 ATGGGAAAGTTCCAAATAACACTTCTCCGTCGAATCGAATCCTGCAAATCAAAATTCTCAACCGCCGATGAAATCGCCAACTATCTCCGTTCAACTTACTCCGATTACCACCACAACGATTATCAATCACTCCTTCAGTTAGTTAGTAACGCTGCTACTcacaccaccaccaacaacaatcGAAAGAGACTTCACATTCATCAATCTGAAACTTCTACTTCCCCTGATTTTGCTCCCGATAGCGGCGGTGGCGAGAAAGAAGCTTCTAAAACTTCTCCAAAGAGACATAAGATTGGTGAATTTGAATCTgaagatgattatgatgatttggatgatgattatgatgatgatgaaagaaTGCAAAATGTGGAATCAACGAGCATGGGAACTTCTTCTGATTACGGCAGTGACAAAGTAGTGTCAAAGACAGAAATGAAACGGaccggtggtggtggtggtgatggaaagaagaaaatgaagggGACTGTGTTTAAGGATTTAGTTGGAAATGAAATGAAGAAGATAATTAAGGAATTGAAGAGAACTGTGAAATTATTGCGTCAACCTGAATTGATTAGAGAGTATGGAATGAAACCTAAAAGAGGAATTTTGTTACATGGTCCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATTGCCAATGAAGCTCAAGTTCCTTTTTATCCTATTTCTGCCACTCATTTTGTTACTGGTGTCACTgGTGGATCTCAAGAAAAGATTAGAGAGCTTTTCTCTAAAGCAAAAAGGACGGCTCCGTCAATTATCTTTATTGATGAGATTGATGCAATTGCTTCAAAACAAGAGGATTTAAAGCGACAGGTGGAGTCTCGAATCATGACACAGTTATTAACTTGCATTGATGGAGTTGGTTATTCAGGGAGTTCTGATGAACCTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTAGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGTTTTGATCGTGAAATTCTTGTTGGCATTCCTGATGAATCTGCCAGGGAGGAGATCCTTATGATGCATACTCGAAATTGCAGTCATAAGCTTGACAATTCGATTGATCTGCGAAAAATAGCCAGGTCCACGCAAGGATTTGTTGGTGCTGATTTAGAAGCTCTTGTTGGCGAAGTTAGCGAACTGGCATTTCAGAGGGTAATGGATGAAATGGAACTTGAATCATCTAATGATCTCATTAGTGATGATGAAGGCCGGTGGAAGGAACATTGGTCacctcaacaaaaaaataaatttgcaatCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAACCTTCATTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAAGATGTTGGTGCGCTTGATCATGTAAGAGAGGAGTTTGATCAACACATTCTAAAGCGCATAAAAGACCCCGACATTTATGAGgGACTTAGGTTGAATTGTGACTCGGGGTTTTTGCTTTACGGACCTCCAGGTTGCGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTaatttcattcatattaagGGTCCCGAGCTTCTAAATAAATATGTTGGAGAAAGCGAGCATGGAGTCCGAAAATTATTTGATCGTGCAAGAACATGCACACCATGTATACTTTTTTTTGACGAGGTGGATGCTTTGACAACAAAACATGGTAATGAGGGTACACGGGTTATTGAAAGAGTGCTCAAACAGTTTCTTACTGAGTTCGAAGGTGCAGAGCAACTCAAAGGTGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGCCTGGGTAGATTTGGTAATCTTATTTATATTCCTCTTCCAAATCCAGACGATCGTGTTTCGATATTGAAAGCTCTTGCAAGAGGTAAGGAAATGCATGCAAGGCGTAAGCAAACTCGTGCCAGGTTTAACCTTATGCCTATTGATGCCAGTGTGGATTTGAGCGCCATTGCAAGAATGAAAGCTTGTGAAAATTTTAGTGGTGCTGATCTTGCTACATTGATGGACAAAACAATATTGGCTGCTCTTGAAGAGAAGCGGACCGCAACTGgaaaaaaaagtgatatattGACTGTCAAGGCTAGGCATTTTGAGGTAGCGTTGAGTAAAGTCTCTCCTTCTGTGTCGGAAGAGCAAAGGAAGTACTATCAGCAACTTTCAAAGAACCTTAAAAGCAGCGTGAAAAGCACGggcaaaaattaa 2268 0.3818 MGKFQITLLRRIESCKSKFSTADEIANYLRSTYSDYHHNDYQSLLQLVSNAATHTTTNNNRKRLHIHQSETSTSPDFAPDSGGGEKEASKTSPKRHKIGEFESEDDYDDLDDDYDDDERMQNVESTSMGTSSDYGSDKVVSKTEMKRTGGGGGDGKKKMKGTVFKDLVGNEMKKIIKELKRTVKLLRQPELIREYGMKPKRGILLHGPPGCGKTRLAHAIANEAQVPFYPISATHFVTGVTGGSQEKIRELFSKAKRTAPSIIFIDEIDAIASKQEDLKRQVESRIMTQLLTCIDGVGYSGSSDEPTGYVLVIGATNRLDAIDSALRRPGRFDREILVGIPDESAREEILMMHTRNCSHKLDNSIDLRKIARSTQGFVGADLEALVGEVSELAFQRVMDEMELESSNDLISDDEGRWKEHWSPQQKNKFAIKMSDFEEAAKMVQPSLTREGFSPIPDVKWEDVGALDHVREEFDQHILKRIKDPDIYEGLRLNCDSGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEHGVRKLFDRARTCTPCILFFDEVDALTTKHGNEGTRVIERVLKQFLTEFEGAEQLKGVFVIGATNRPEVIDSALLRLGRFGNLIYIPLPNPDDRVSILKALARGKEMHARRKQTRARFNLMPIDASVDLSAIARMKACENFSGADLATLMDKTILAALEEKRTATGKKSDILTVKARHFEVALSKVSPSVSEEQRKYYQQLSKNLKSSVKSTGKN 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01712 755 Gene3D - 341 450 - -
Tsu03g01712 755 ProSitePatterns AAA-protein family signature. 598 616 IPR003960 GO:0005524|GO:0016887
Tsu03g01712 755 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 39 744 - -
Tsu03g01712 755 MobiDBLite consensus disorder prediction 87 103 - -
Tsu03g01712 755 MobiDBLite consensus disorder prediction 57 158 - -
Tsu03g01712 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 441 IPR027417 -
Tsu03g01712 755 Gene3D - 153 339 IPR027417 -
Tsu03g01712 755 CDD AAA 490 628 - -
Tsu03g01712 755 Pfam ATPase family associated with various cellular activities (AAA) 499 628 IPR003959 GO:0005524|GO:0016887
Tsu03g01712 755 Pfam ATPase family associated with various cellular activities (AAA) 203 338 IPR003959 GO:0005524|GO:0016887
Tsu03g01712 755 SMART AAA_5 494 630 IPR003593 -
Tsu03g01712 755 SMART AAA_5 199 342 IPR003593 -
Tsu03g01712 755 MobiDBLite consensus disorder prediction 139 158 - -
Tsu03g01712 755 Gene3D - 456 739 IPR027417 -
Tsu03g01712 755 MobiDBLite consensus disorder prediction 104 119 - -
Tsu03g01712 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 744 IPR027417 -
Tsu03g01712 755 PANTHER AAA-FAMILY ATPASE 39 744 - -
Tsu03g01712 755 Gene3D - 629 724 - -
Tsu03g01712 755 CDD AAA 171 339 - -
Tsu03g01712 755 Pfam AAA+ lid domain 364 402 IPR041569 -
Tsu03g01712 755 Pfam AAA+ lid domain 666 719 IPR041569 -
Tsu03g01712 755 ProSitePatterns AAA-protein family signature. 310 328 IPR003960 GO:0005524|GO:0016887
Tsu03g01712 755 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01712 Tsu-Chr3 17482597 17488712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01712 196 729 Calmodulin-binding Proteins AT3G56690 34.975 1.81e-110 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01712 K14571 - gmx:100809594 758.444