Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01707 ATGGAAGAAGTTCAAGAAGTGATTAAGCACGTTTGCAAAATCTGTAGCAAGAATTTTTCTTGTGGTAGATCATTAGGTGGTCACATGAGGTCACATGATCATGTAAAAATCAATGTtcatcatgatgatgatgatgatgatgatgatggtgatggtgatgatgatgagtttgttgttgatgcTGCTACAACAACAATGAAGAAAGAACAAGGTTGTTCTGAAGGGTTTTATGGTCTTAGAGAAAATCCAAAGAAAACTTGGAGAGTACTCAATGATTCAACTATTGATGAAGATTCAACTTTTGATGTTGTTTTGGATAAATTGTGCAAAGAATGTGGTAAGGGTTTTCAATCTATGAAAGCTTTGTTTGGTCATATGAAGTGTCATTCGGATAAAGAAAGGGTTTCGAGTAATAAGAAGAAGAATCGtagttttgaatttgatgatgaaCAAGAAGAATCTAATGCTACTGTTCTTCCAAATAGAAAGAGAAGATCTAAAAGAAGATTAAGAACAAGGTACATAAATAGTGGTAACACTTCTTCTTCTGTTGTGAATTTTGTTGCAAATTCTGTAGCTTCATGTACTGTTTCTgatgaagaaaaagaacaagaacaagaggTTGCTATGAGTTTGATTATGCTTAGTAGAGATGTTAGACCTTGGTGTGGTATCAATTCTATTGCTGAATTTTctgataataataatgatgatgataatggtgatgatgatgataacaACTCTTTGGAATTAGAAGCTCCATTAACTCATTTAGTTTCTaagattgaagagaaaaaaagggTTATCTCAAATGGTTCTGAAATTGTTAAAGCGACTAAAAAACCAAAGAAGTTGGATTTTGGTAAAAGTTTGGAAATTTTTGCTGATGAGAGTGAAGGAAATGATggattgaagatgaagaaaactAAGAAAACTAGAGTTTCTGTTATTGAGAATGGAAAGGATGATAAGAAGAAGGAAAAGATGGAGATTGAGGTTGATTCTGATTCAGCATTTGAGGTCAATGTAAGATCAAAATCAGGTACTACTAATACTACAAAGTACACTTCGTTGAAGGAAAAGTTTTTCGATTCTGAAACTAAGGTTACACTTACATCAGAAGGTGAATCAAGCAAgagaaaatataataagaaaGGAAAATTTGAGTGTGCTACTTGCAACAGAAGTTTCCAATCTTATCAAGCTCTTGGTGGTCATAGAGCTAGTCATAAGAGAACAAAAGGGTGTTTTGCTTCAAAAATTGATCAAAGTAGTGAAGTTGAAAGCATTGCTGAATTGGAATTGGAAGTGGAAGTGGAAGTAGATGTGAAGATCAATGTTAATGCTGAGGAAAGAGTGTTAGAAAGTGAAAGAGTTTTGCTTGAGGAAGAAGTTCCTGAAATAAGGAACTTCCTTGATCTTAATCTTCCTGCTACTGCAAGTATTGATGAAGAAAGAGGCAATGGCAGTAGCCATTCTGAGATTTACAAATCATGGTGGTTAGTTGGAGGTAGCAGTCTCAACCAAGATGCAATGGCAGTAGGCCTACTATCAAACTAG 1560 0.3 MEEVQEVIKHVCKICSKNFSCGRSLGGHMRSHDHVKINVHHDDDDDDDDGDGDDDEFVVDAATTTMKKEQGCSEGFYGLRENPKKTWRVLNDSTIDEDSTFDVVLDKLCKECGKGFQSMKALFGHMKCHSDKERVSSNKKKNRSFEFDDEQEESNATVLPNRKRRSKRRLRTRYINSGNTSSSVVNFVANSVASCTVSDEEKEQEQEVAMSLIMLSRDVRPWCGINSIAEFSDNNNDDDNGDDDDNNSLELEAPLTHLVSKIEEKKRVISNGSEIVKATKKPKKLDFGKSLEIFADESEGNDGLKMKKTKKTRVSVIENGKDDKKKEKMEIEVDSDSAFEVNVRSKSGTTNTTKYTSLKEKFFDSETKVTLTSEGESSKRKYNKKGKFECATCNRSFQSYQALGGHRASHKRTKGCFASKIDQSSEVESIAELELEVEVEVDVKINVNAEERVLESERVLLEEEVPEIRNFLDLNLPATASIDEERGNGSSHSEIYKSWWLVGGSSLNQDAMAVGLLSN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01707 519 SUPERFAMILY beta-beta-alpha zinc fingers 108 410 IPR036236 -
Tsu03g01707 519 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 438 - -
Tsu03g01707 519 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 449 519 - -
Tsu03g01707 519 Gene3D Classic Zinc Finger 2 133 - -
Tsu03g01707 519 Pfam C2H2-type zinc finger 388 412 - -
Tsu03g01707 519 Pfam C2H2-type zinc finger 10 32 - -
Tsu03g01707 519 Pfam C2H2-type zinc finger 109 131 - -
Tsu03g01707 519 ProSitePatterns Zinc finger C2H2 type domain signature. 390 410 IPR013087 -
Tsu03g01707 519 MobiDBLite consensus disorder prediction 133 160 - -
Tsu03g01707 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Tsu03g01707 519 SMART c2h2final6 10 32 IPR013087 -
Tsu03g01707 519 SMART c2h2final6 388 410 IPR013087 -
Tsu03g01707 519 SMART c2h2final6 107 129 IPR013087 -
Tsu03g01707 519 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Tsu03g01707 519 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Tsu03g01707 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Tsu03g01707 519 MobiDBLite consensus disorder prediction 133 171 - -
Tsu03g01707 519 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 449 519 - -
Tsu03g01707 519 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 438 - -
Tsu03g01707 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 388 415 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01707 Tsu-Chr3 17444692 17446251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01707 1 236 C2H2 Transcription Factor Family AT1G26610 36.327 3.21e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g01707 zf-C2H2_6 2.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01707 - - cam:101495666 501.516