Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01706 ATGTACCCTCAACAACAGTATCAAGTTCCACCGTACAATttgcagcaacaacaacaacaaccctaTTATTCATCACTTCATCCTCCTGGTACTGACCCAGTTGCAAATTCAACACCTTTTTCTGCTCATGCTTCTGTTTATGCGTCTCAAACAACAGATTATCAGAATTGGATCGTTCCACAACCTGAACATATCGCATATGATCCTGCTGTTGGTTCATCGCACGAGGCTTCAGCAGTGTCTGCAAGTTTGCCTCCTGCATGTTATGCCACATGGCCATATCCAATTTATGGCAATGATATGAAAACAATGTTGCCTAACCAAACCAAAGTCTCCAAAGCTATAAGATGTGAAGTGTGTAAAATTGATCTCAATAGCAAAGATTCTTATGAAAAGCACATAGCTGGAAAGAAACACAAGAAGAATTTACAGGTACAGACTAATCCTACCATTGCATCTCATGTGAATGTACAATGTGACACAAGTAGCATCCAAGGACAATTGTTAGTTGGTCCCGTAACCGAGCAATTAGAGCATAAGAAACAGGTGGCACCTAGTGGTGGTGCACCAGCTGATTCTGCAAAGGTTTGCTCAACGTGCAATGTCCTCTGCACTAGTCAAGACACATACAACAAACATATTGCTGGGAAAAAACATGCTAATCAGGTTCGCTTGATATCTAATAATGGCATTGGTCCATCTAGTGCTGAATTCAAACGTAGCAGTGTTGGCCCATTGCAAAAAGCTGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGCGAAATTTGCAAGATTACTTGTAACAGCAGGGATATTTACATTTCACACTTAGCCGGTAAGAAACACTTAAAGAACTTGGAGAAACTGTCAAATCCAAAAACCGATGCCATTTCCGGTGCTACTACCACCTCCACTGCCAAAAATACTTTAATCGGTCCACAGGAAAAGCCAGATACTGATAAACCAACACCAAAGAAGGCACCAGAAGTTGATATCGAGACAAAGAAACGTAAAGTCGTGGAAGGAGGAGCTGCAGTTAATGATATTAAAATGTGCACTTTATGCAATGTAGTGTGTAATAGCCAGACGGTGTTCGATACTCACCTTGTTGGCCAGAAACATGCTGCTATGGTGAAGAAGGCAGGCTCGAGCACTGGTTGA 1164 0.4081 MYPQQQYQVPPYNLQQQQQQPYYSSLHPPGTDPVANSTPFSAHASVYASQTTDYQNWIVPQPEHIAYDPAVGSSHEASAVSASLPPACYATWPYPIYGNDMKTMLPNQTKVSKAIRCEVCKIDLNSKDSYEKHIAGKKHKKNLQVQTNPTIASHVNVQCDTSSIQGQLLVGPVTEQLEHKKQVAPSGGAPADSAKVCSTCNVLCTSQDTYNKHIAGKKHANQVRLISNNGIGPSSAEFKRSSVGPLQKAAKKIKVAQSAWCEICKITCNSRDIYISHLAGKKHLKNLEKLSNPKTDAISGATTTSTAKNTLIGPQEKPDTDKPTPKKAPEVDIETKKRKVVEGGAAVNDIKMCTLCNVVCNSQTVFDTHLVGQKHAAMVKKAGSSTG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01706 387 MobiDBLite consensus disorder prediction 294 313 - -
Tsu03g01706 387 PANTHER - 234 384 - -
Tsu03g01706 387 PANTHER - 6 221 - -
Tsu03g01706 387 Pfam Zinc-finger of C2H2 type 116 139 - -
Tsu03g01706 387 Pfam Zinc-finger of C2H2 type 196 219 - -
Tsu03g01706 387 Pfam Zinc-finger of C2H2 type 260 283 - -
Tsu03g01706 387 Pfam Zinc-finger of C2H2 type 353 375 - -
Tsu03g01706 387 SUPERFAMILY beta-beta-alpha zinc fingers 346 381 IPR036236 -
Tsu03g01706 387 SUPERFAMILY beta-beta-alpha zinc fingers 257 290 IPR036236 -
Tsu03g01706 387 SMART c2h2final6 351 375 IPR013087 -
Tsu03g01706 387 SMART c2h2final6 195 219 IPR013087 -
Tsu03g01706 387 SMART c2h2final6 115 139 IPR013087 -
Tsu03g01706 387 SMART c2h2final6 259 283 IPR013087 -
Tsu03g01706 387 Gene3D Classic Zinc Finger 189 230 - -
Tsu03g01706 387 SUPERFAMILY beta-beta-alpha zinc fingers 91 145 IPR036236 -
Tsu03g01706 387 PANTHER ZINC FINGER RNA-BINDING PROTEIN 234 384 - -
Tsu03g01706 387 PANTHER ZINC FINGER RNA-BINDING PROTEIN 6 221 - -
Tsu03g01706 387 Gene3D Classic Zinc Finger 100 146 - -
Tsu03g01706 387 Gene3D Classic Zinc Finger 329 382 - -
Tsu03g01706 387 Gene3D Classic Zinc Finger 242 290 - -
Tsu03g01706 387 SUPERFAMILY beta-beta-alpha zinc fingers 192 225 IPR036236 -
Tsu03g01706 387 MobiDBLite consensus disorder prediction 294 331 - -
Tsu03g01706 387 SMART ZnF_U1_5 192 226 IPR003604 GO:0003676|GO:0008270
Tsu03g01706 387 SMART ZnF_U1_5 256 290 IPR003604 GO:0003676|GO:0008270
Tsu03g01706 387 SMART ZnF_U1_5 112 146 IPR003604 GO:0003676|GO:0008270
Tsu03g01706 387 SMART ZnF_U1_5 348 382 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01706 176 382 C2H2 Transcription Factor Family AT5G61190 29.952 8.59e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g01706 zf-met 3.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01706 - - cam:101495339 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01706 03 17414335 17419121 Tsu03g01706 03 17414335 17419121 ECH