Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01701 atggatATCATAAGCACTTTACCGGATGCCATTCTCTGTCACATTCTCTCCTTTCTCAAAACCAAACAAGCAGTTGCCACAAGCATTCTTTCGACGAGGTGGAAGCATCTCTGGCTATCAGTTCCCGTTCTGGACTTCNGTCACATTCTCTCCTTTCTCAAAACCAAACAAGCAGTTTCCACAAGCATTCTTTCGACGAGGTGGAAGCATCTCTGGCTATCAGTTCCCGTTCTGGACTTCAGCAACACTCATGTGACAGACGAAGAGGACAATCTTCGCTTTAACGACTTTGTCTACTCTGTTTTGTTGTCACAAGATTCTACAATTCCCATTAAGATTTTTCGCCTTACCTCcaattattttactaaaaaaccTTCCTATTTTAGGACTCCCGGTTTCGCCAAATGGATCAACTATGTGCTACAGCGCGGAGGAGTTGAGTACCTTGATCTGCACGTGAGCGGGCTGGGTGGGCCTATATTGCCTATTACCATTTTCAGTTGCACAACCCTAGTGGTTCTCAAGCTTTTCCTTTTCTCGGTAGACCCTAGGATTTCTTCCGTTTTATTATTACTTCCCTCGCTCAAAACCCTTCATTTAGAATATATAAAGTTCCCAAAACATCAAGATTTTATGTTGCTTTTAGCTCAATGTCCAAATCTAGAGAATTTACGCATATTAGAACTATTGTTTGATGAAGAGGACTCTCGAAGCTGTGACAAATGGGAAAACTTTACATTAAGTAACTTGACCAAAGCAGATGTTGATtcgtcttattttctttttccgaTGAAAGCACTTCACAACGTAAAGTCTCTTTATATGTGCATTTCAACTGCTCAGGTGCAATGCTATATTGGTGCTACTCCTACCTTTCATAATTTGACCCGCCTAATCCTTTTATCTCTCAATTATCGTTGGAATTTCCTTGTAGGACTTCTCGAAAACTGCCCTAAGCTTCAAGAGTTTTACCTTGACGAGATCAGCTGGGACTCGTACCAAACATGGACTAGAAAAGATGACCAAGAAAAATGGGTGGACCCAGATTTTGTTCCGCAATGCCTTTCATTACACCTTAGAGATTGCTATCTTGCTAGCTTCTTAGGCCTACAAGGTGAACTTCGGCTAGCAAAGTATATCTTGAAGAGTGCAAGAGTTTTACAAACCATGGTAATCGTTATCACTGGAGAACCCGGAAGAAAAGAACTAATAGAAGAACTGTTATCCTCATTCCCAAGGGCCTCTTCATCATGTGAACTTAAAATTCATTATGTTCCACGTGATGATTCAAGTAAGTCTGATTCGTCTTCGGATGCAAGCGCATGCAGGTCATTTCGTTATCTTCACTACGAATGCGAACAACCTGTTATTCATTGTGATTTGAAGCCTGCAAATGTTCTTATAAATGACTTCCTTGTAGCTCAAGTAAGTGATTTTGGCTTAGCAAGGTTGCTGTCAAGTGTTGGAGTACCTTTGATGCAAAGTAGCACAATAGGAATAAAGGGGACAATTGGTTATGCAGCCTCAGAATATGGAATGGGATCTGAGGTGTCAACTGAAGGCGACATGGATAGCTTTGGAATACTTGTACTAGAAATGTTAACTGGAAAGAGACCTACGGATGAAATTTTTAAAGATGAtcataattttcataattatGTGAAACTTTCAATTCCGGATCATCTTTTCCAAATTGTGGACCAATCTATTCTTGCCATTGAATTAGACTACGACGCTGACAACGAGATCCATTTGCTACTGCATATAATGCAGAAAATTCATGACAGATTGCAGTCTCTCCTAACCAAACATCTTCCCAAAAGAGAATGCTTTCTTCATTTCACAATATCCCTCCCTGCATTGGATCACACTAAGTGGTTCGGTCCTTCATCCTCTCGTGTAAAACGGTGGAAAATTTCTAAGATGGATATCATAAGCACTTTACCGGATGCCATTCTCTACCCTAGGATTTCTTCCGTTTTATTATTACTTCCCTCGCTCAAAACCCTTAATTTAGCATATATAAAGTTCCCAAAACATCAAGATTTTATGTTGCTTTTAGCCCAATGTCCAAATCTAGAGGATTTACGCATATTAGAACTATTGTTTGATGAAGAGGACTCTCGAAGCTGTGACAAATGGGAAAACTTTACATTAAGTAACTTGACCAAAGCAGAGGTTGATtcgtcttattttctttttccgaTGAAAGCACTTTGCAATGTAGAGTCTCTTTTAATGTGCATTTCAACTGCTCAGGTGCAATGCTATAATGATGCTACTCCTACCTTTCATAATTTGACCCAACTACTCCTTTACTCTCTCAATTATCGTTGGAATTTCCTAGCCGGCTTGGTCTCAAATAACCAAACATGGACTAGAAAAGATGACAAAGAAAATTGGGTGGACCCGGATTTTGTTCCACAATGCCTTTCATTACACCTTAGATATTGCTATCTTTCCAGCTTCTTAGGCCTACAAGGTGAACTTCAGCTAGCAAGGTATATTTTGAAGAATGCAAGAGTTTTACAAACCATGACAATCGGTACCACTGGAAAACCCGGAAGAGAAGAACTAATAGAAGAACTGGTATCCTCATTTCCAAGGGCCTCTTCATCATGTAAACTTAAAATTGGTTATGTTCCACGTTTGGATTCAAGTGAGTCTGATTCGTCTTCGGATGCAAGCGGATGCAAGTGTATGTAA 2706 0.3891 MDIISTLPDAILCHILSFLKTKQAVATSILSTRWKHLWLSVPVLDFXHILSFLKTKQAVSTSILSTRWKHLWLSVPVLDFSNTHVTDEEDNLRFNDFVYSVLLSQDSTIPIKIFRLTSNYFTKKPSYFRTPGFAKWINYVLQRGGVEYLDLHVSGLGGPILPITIFSCTTLVVLKLFLFSVDPRISSVLLLLPSLKTLHLEYIKFPKHQDFMLLLAQCPNLENLRILELLFDEEDSRSCDKWENFTLSNLTKADVDSSYFLFPMKALHNVKSLYMCISTAQVQCYIGATPTFHNLTRLILLSLNYRWNFLVGLLENCPKLQEFYLDEISWDSYQTWTRKDDQEKWVDPDFVPQCLSLHLRDCYLASFLGLQGELRLAKYILKSARVLQTMVIVITGEPGRKELIEELLSSFPRASSSCELKIHYVPRDDSSKSDSSSDASACRSFRYLHYECEQPVIHCDLKPANVLINDFLVAQVSDFGLARLLSSVGVPLMQSSTIGIKGTIGYAASEYGMGSEVSTEGDMDSFGILVLEMLTGKRPTDEIFKDDHNFHNYVKLSIPDHLFQIVDQSILAIELDYDADNEIHLLLHIMQKIHDRLQSLLTKHLPKRECFLHFTISLPALDHTKWFGPSSSRVKRWKISKMDIISTLPDAILYPRISSVLLLLPSLKTLNLAYIKFPKHQDFMLLLAQCPNLEDLRILELLFDEEDSRSCDKWENFTLSNLTKAEVDSSYFLFPMKALCNVESLLMCISTAQVQCYNDATPTFHNLTQLLLYSLNYRWNFLAGLVSNNQTWTRKDDKENWVDPDFVPQCLSLHLRYCYLSSFLGLQGELQLARYILKNARVLQTMTIGTTGKPGREELIEELVSSFPRASSSCKLKIGYVPRLDSSESDSSSDASGCKCM 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01701 901 SUPERFAMILY F-box domain 2 44 IPR036047 GO:0005515
Tsu03g01701 901 Pfam Protein kinase domain 442 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01701 901 SMART 9598neu4hmm 353 423 IPR006566 -
Tsu03g01701 901 SMART 9598neu4hmm 809 879 IPR006566 -
Tsu03g01701 901 Gene3D Transferase(Phosphotransferase) domain 1 439 601 - -
Tsu03g01701 901 Pfam F-box domain 4 41 IPR001810 GO:0005515
Tsu03g01701 901 SUPERFAMILY RNI-like 143 329 - -
Tsu03g01701 901 SUPERFAMILY Protein kinase-like (PK-like) 441 558 IPR011009 -
Tsu03g01701 901 SUPERFAMILY F-box domain 47 90 IPR036047 GO:0005515
Tsu03g01701 901 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 662 707 - -
Tsu03g01701 901 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 261 423 - -
Tsu03g01701 901 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 1 46 - -
Tsu03g01701 901 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 732 878 - -
Tsu03g01701 901 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 47 235 - -
Tsu03g01701 901 Gene3D - 1 44 - -
Tsu03g01701 901 Gene3D Ribonuclease Inhibitor 54 381 IPR032675 -
Tsu03g01701 901 SMART serkin_6 357 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01701 901 ProSiteProfiles Protein kinase domain profile. 322 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01701 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Tsu03g01701 901 Pfam FBD 348 392 IPR006566 -
Tsu03g01701 901 Pfam FBD 804 848 IPR006566 -
Tsu03g01701 901 Pfam Leucine Rich Repeat 666 691 IPR013101 -
Tsu03g01701 901 Pfam Leucine Rich Repeat 194 219 IPR013101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01701 Tsu-Chr3 17370499 17384933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01701 447 575 Receptor kinase-like Gene Family AT3G47580 56.489 2.21e-39 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu03g01701 Pkinase 2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01701 - - mtr:MTR_3g107100 285.804