Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01699 ATGGTGGAACTCACAGAAGAACAAAGAAACCAAATGGAAGCGAATCGCATTGCTGCATTAGCAAAACGAAAAGCTTTCTTAGAATCAATTTCTCAACAAAACCCTTGGCATCTTTTCAAATGCCAGAAAATTTCTCAACCTCAACCATTTCAACCTAAACCTGAACCTGATTTCAAATTCCTCGCTAGACTTGAAATTTGTTCCTATGATTCTTTCACTATTACTCCTCTTCCTGTTCCTAATTTCCATTTTCCAACATTTGATACTTGTTTCGCCATTCTCAATAACATTCTCTCACGTATGGATGTGGATCCATCACATTTTACGCAGACAAGTGCGGGCGGGAAAGCCTGTGTGTTCAAATTAGCGGACTACCGTAGTGTTTTGAAGCTGTTAAAGGCGGAGATTGAGGTGGAGGAGATTCCTTGGAACACTTTCAATGTGGTTGAGAAGCTTTCACATTTGGAGGGGAGGTGGACACCGGTGAGACCGGAACATTTGACTGATGATGAGGTCGATGGTTTGATTGGAAAGTTGCCTAAGAGTTTAGTTGATGTATTGTTGCCATTTCAAATGGATGGTTTAAGGTTTGCCCTTAGAAGAGGTGGTCGATGTCTCATTGCTGATGAAATGGGACTTGGGAAGACACTTCAGgCTATTGCTATTGCAGGATGTTTTATGGATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGATATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCTTCCTGCTTGCCTGCAGATATCCATCTCGTTTTTGGCCATCAAGACAATCCTGTATATCTAACAAGATGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTTTGATTGTTGATGAATCTCATCATGTACGTGCTACAAAGAAAGCCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAGAAATCAAGCGTATAATTCTGTTATCAGGGACACCTTCTTTATCAAGACCGTATGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGACAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGGAAAATTTTTGCGGATTACTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAGACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAAATTGTCGTTGAAGAGATCAGATATAGTTGCAGCGAAAACTGCAGTTGGGGCTTTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGAGATGCCTTTGGAAAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTCGTGAATGGCTTTCCTTCCATCCACTCATTGCGGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTATATATGTGACAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACACTACCCAGAGATAGACAATCCGCAGTAACCTCATTTCGATCATCACCGGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCGACAGCACAAGATGTTGTGTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGGCGGGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTCGGATGAATCGCATTGGCAACATTTGAACAAAAGTTTGCACCGTGTTTCATCTACAACGGATGGCAAATATGATGCAGTGAAAGAGATAGAGGTTGAAGATGTTTCTTCTTTAGGCCCATCCTTGAAAATTAACAGATCTATAGAACAATCTGCATTCAAAGATGCATCCATTAGAAGACAATTGGATAGTGAACTCGCTACAGTATCTGCAGTGAAATCAAATGAAACAGCAACTAATCAAGATGATGACTCTGGTCTTGTAAACAACATAAATCAGGGTGCTAATATTATGGTTGATAGTGTTTCCGTCCTAGATTTAGGCAAGGCTTCAGTTTTGGATGGAATTCGTGATGTAGATGTTTTTTATGCTGCGGATCGATGTTCTGAAGAGAGTTTCGAGAACAAAGATGAAGTAATAGAGGATAAGAAATCAACTTCAACAACAGATGCAGATGACGACCAGCCCAGTCATCCTGTTGAAACTGAAGTACACTGCTCTCATCAAGTTAATTCTTTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACTTGCATTTTGGGTAAAGATGCAAGACCACAGCCACTTTGTGAAAATTTCCGACCAGAGGACCTTGAGCTGCTGAGTCCTGCTGATGAGAAGCAGGGTATAGAGTCTACATCTGTCAAGGATAATCCTGCTTATAGGAATGCTCTTCTGGATTTTGCTAATGAGTGGAAGAATTTAAGGTCAATTGAACGCAATAAGCTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAACTAATAACCACAATAACAAGGGATTAATAAATGGTGGAAGCAAAAGGCGCATGACTCCTTTAGTGGACATCAGCTATCCGTTACCACCAGATGCTGTTTGGAAAAAGGTTTTTCTTCGAAGTGGTCGTGGTAAGAAGGAAAAAGAATACAGTCAAGGCTGGAGTCCAGAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAGCAATGCATGGGTCATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACCAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGCATATAAGACCTTTGTCCTTGGAAAGACGGAGAGCGTACATTGAAAAAGTAGCACCAAATATTGCAAAGCGAACGAAGATGCTTGACAAGCTTGTCAAAGAACCAATTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAgGTGAATGCAAACTTGAGAATATGAGAACTCTTTGTGTGGCTTGCCATCATGATGTTACTGCTGTACAATGTGCTGACCGACGCATTATAAGAGCAAATGCACGGAAACAACTAAAAGAATTGATGAATACCATGAAAAATAGTATGAAGGGTGTTGCTGGCACTAATAATAAGGACCAATTGCTTTACGCGGAACAAGAAAATATGCACGAAGATGATATTTTAGTCCCGGTTCCTGGAAGTGCCTATTCGCTAGCTAATAGCCAAGAAAGTGGCGATGTAGCCTGTTAA 3480 0.4103 MVELTEEQRNQMEANRIAALAKRKAFLESISQQNPWHLFKCQKISQPQPFQPKPEPDFKFLARLEICSYDSFTITPLPVPNFHFPTFDTCFAILNNILSRMDVDPSHFTQTSAGGKACVFKLADYRSVLKLLKAEIEVEEIPWNTFNVVEKLSHLEGRWTPVRPEHLTDDEVDGLIGKLPKSLVDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRYSWAEEIERWLPSCLPADIHLVFGHQDNPVYLTRCPKVVVISYTMLHRLRKSMLERKWALLIVDESHHVRATKKASEPGEIKAVLDVASEIKRIILLSGTPSLSRPYDIFHQINMLWPGLLGTTKYEFAKTYCDLKYIKGVQGKIFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIKLSLKRSDIVAAKTAVGALKIDASENASEEMPLESLDEHDGKLTYQELGIAKLSGFREWLSFHPLIAGSENASKMIIFAHHHKVLDGVQEYICDKGVGFVRIDGHTLPRDRQSAVTSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTSDESHWQHLNKSLHRVSSTTDGKYDAVKEIEVEDVSSLGPSLKINRSIEQSAFKDASIRRQLDSELATVSAVKSNETATNQDDDSGLVNNINQGANIMVDSVSVLDLGKASVLDGIRDVDVFYAADRCSEESFENKDEVIEDKKSTSTTDADDDQPSHPVETEVHCSHQVNSLRFEVSPYTGRIHLYTCILGKDARPQPLCENFRPEDLELLSPADEKQGIESTSVKDNPAYRNALLDFANEWKNLRSIERNKLLGKPLQLPLAVELCYLSETNNHNNKGLINGGSKRRMTPLVDISYPLPPDAVWKKVFLRSGRGKKEKEYSQGWSPEDEPLCKLCQKQCMGHNAKTPEYFEDLFCNLVCYQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVHIRPLSLERRRAYIEKVAPNIAKRTKMLDKLVKEPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCADRRIIRANARKQLKELMNTMKNSMKGVAGTNNKDQLLYAEQENMHEDDILVPVPGSAYSLANSQESGDVAC 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01699 1159 Pfam HNH endonuclease 1045 1081 IPR002711 GO:0003676|GO:0004519
Tsu03g01699 1159 Pfam SNF2-related domain 205 454 IPR000330 GO:0005524|GO:0140658
Tsu03g01699 1159 Gene3D - 406 684 IPR027417 -
Tsu03g01699 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 643 IPR001650 -
Tsu03g01699 1159 SMART ultradead3 183 379 IPR014001 -
Tsu03g01699 1159 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 5 1106 - -
Tsu03g01699 1159 SMART helicmild6 514 597 IPR001650 -
Tsu03g01699 1159 MobiDBLite consensus disorder prediction 746 772 - -
Tsu03g01699 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 360 IPR014001 -
Tsu03g01699 1159 Gene3D - 167 405 IPR038718 -
Tsu03g01699 1159 Pfam Helicase conserved C-terminal domain 496 597 IPR001650 -
Tsu03g01699 1159 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1106 - -
Tsu03g01699 1159 CDD SF2_C_SNF 479 608 - -
Tsu03g01699 1159 CDD DEXHc_HARP_SMARCAL1 187 411 - -
Tsu03g01699 1159 CDD HNHc 1043 1083 IPR003615 -
Tsu03g01699 1159 Gene3D - 974 1111 - -
Tsu03g01699 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 649 IPR027417 -
Tsu03g01699 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 411 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01699 Tsu-Chr3 17352688 17369053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01699 502 650 RAD5 or RAD16-like Gene Family AT1G11100 33.113 2.90e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu03g01699 SNF2_N 1.3e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01699 K25861 - gmx:100788690 1733.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01699 03 17352688 17369053 Tsu03g01699 03 17352688 17369053 ECH