Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01678 ATGTCAGAACAAGAATCTGATTCATGGAGCTTCATGTTGGTTTGTTTTTTGATCATTTTCTCAGGTAAACTAGTTGATGGAGATTCATTGGTAACAGACACAAAAGtattattgaatttgaaatccTATTTGGAGAATCAAACAGCTTCAAACAAAGGAGAATATATAAGATGGAATAAGAACAAATCAAATCCTTGTGAATGGTCAGGAATATCATGCAACCAAATCAAAGGTAAAAGAAAATGGAGGGTTGTAAGTGTAGATATCTCAGCAAGTGAAATTGCAGGTAAGATGTTTGACAATTTCTCTCAGTTAACTGAACTCACACACCTTGATGTTTCAAGGAACACTCTCTCTGGAGAGATTCCTCAAGATATAAGAAAATGTAAGAATCTTGTGTATCTTAATTTATCTCATAATATTCTTGAGGGAGAATTGAATTTGACAGGTTTGAGTAAGTTGCAAACATTGGATTTGTCTATGAATAGAATTCAAGGTGAACTTCAGTTGAATTTTCCTGATAATTGTGATAGTTTGATTACTTTGAATGTTTCAGATAATCACTTTTTTGGTAGGGTTGATAAGTGTTTTGATAAGTGTTTAAGGTTAAAGTATTTGGATTTGAGTACAAATAATATAAGTGGTGTTTTATCAAATGAAATTTCAAGGTTGAGACAATTTTCAATTTCTGAGAATTTTTTAAGTGGGATTATACCTTCACAAGCTTTTCCAATGAATTGTAGTCTTGAAAAATTGGATCTTTCTGTCAATGGATTTTTCGGTAAACCGCCTAAGGAAGTTGCTAACTGCAAGAATTTGGAGATTCTAAATCTTTCTAGTAACAATTTTAGTGGTGAAATACCACATGAAATTGGTACAATTTCTGGTCTTAAATCATTGTTCTTGCAGAATAACACCTTTTCAAGAGATATTCCAAATACCCTTTTGAATTTGACCAATTTGTTTATCTTGGATATAAGTAGAAACAATTTTGGTGGTGAGGTACAACAAATATTTGGTAAATTCAAGCAATTGAGGTTTCTTTTGTTACACACAAATTCTTATGTTAAAGGATTGAATTCATCAGGAATTTTCACATTGACTAATCTTACAAGATTAGAGTTAAGTAACAACAACTTTTCAGGTCCATTACCTATTGAGATTTCTCAAATGTCTGGTCTCATATTCTTATCGTTAAGCAACAATAGCTTCAATGGTTCTATTCCTTCTGAATTAGGAAAGTTGAGTAAATTGCAAGCAATTGAACTTGCTTTCAATAGTTTCAATGGAAAAATTCCACCAAGCCTTGGAAACTTGAATTCTCTTCTTTGGTTAATGCTTGCAAATAATTCATTAACAGGCGAAATCCCTCGTGAGTTAGGTAACTGTTCAAGTTTAATATGGTTGAACCTTGCAAACAACAAACTCACTGGAAAATTTCCTTCTGAGTTGACCAGAATTGGAAGAAATGCTATGGATACATTTGAATTAAATCATAGAAACATGGTTGGAGTTGTTGCTGGAAATAGTGAGTGCTTGTCGATGAGAAGATGGATACCTGCCGATTACCCTCCATTCAGTTTTGTGTATAGCATCTTAACAAGGAAGAATTGTAGATCCCTTTGGGATAGATTGCTTAAAGGATATGGAATTTTTCCTATGTGTGCATCTGAACCATCAACTAGATCATCTCATAAATTTGGTTATGTTCAGTTAAGTGGTAATCAAATTAGTGGTGAAATTCCTTCAGAAATTGGAACCATGGTAAATTTCAGTATGTTGCATTTAGGAGACAACAAATTCAGCGGCGAATTTCCAAAAGAAATTGGTGGTTTGCCACTTATAGTGTTGAACATGACTCGGAACAAATTTTCTGGTGAAATTCCTAGGGAAATTGGTAACATGAAGTGTATGCAGGATCTTGATTTGTCTTGGAACAATTTCTCAGGTACATTTCCAACAAGTTTGGTCAATTTGGACCAACTTAGCAGGTTCAATATCTCATATAATCCTTTATTATCCGGTACAGTACCACCATTAGGTCACTTGCTTACTTTTGATAAGGATTCATATTTAGGTGATACCCTTTTAGATCTTCCAAAGTTTTTTGATAACACCCCAGatggaaaaaacaaaacttttgacAAAATTAGAGTGAGAAAACCCACAAAATGGTATCTTTGTGTTGCTCTAACACTAGCTTGTTTGGTTTCTGGACTTCTTTTTCTAACTGTTTATTTCTTGGTGAAAAGTTCATCTAAACAAGGAAAGTTTCTCAAAGATAAAAATCAGGAAATATTTTCTGATTCTATCAAGATATTCCACTTGAACAATATAGTTTTCACGTATGCCGACATTCTCAAAGCAACAAGCAACTTCAAAGAGGAAAGAATCATAGGAAAAGGTGGTTTCGGAACGGTATACAAAGGAATTTTTCCTGATGGAAGAGAAGTGGCAGTGAAGAAGCTACAAAGAGAAGGAATTGAAGGCGAAAAAGAATTCAAAGCCGAAATGAAAGTCCTTAGTGGTCAAGAATTTGGATGGCCACATCCACACCTTGTCACACTTTATGGTTGGTGTTTATATGGTTCACAAAAGTTACTAGTTTATGAGTACATAGGAGGTGGAAGTTTGGAAGAATTAGTCACTGATACAAAAACATTGACGTATAAAAGGCGCTTAGAAGTCGCAATTGATGTGGCTAAAGCGTTAGTTTATCTACACCATGAATGTTACCCTCCAATTGTGCATAGAGATATGAAAGCCAGTAATGTGTTGCTTGATAAAGAAGGCAAAGCAAAAGTAACCGATTTCGGACTTGCTAGAGTTGTTGATGTTGGTGATAGTCACGTGAGTACAATCGTAGCCGGAACTGTTGGTTATGTTGCACCTGAATATGGACAAACATGGCATGCTACAACAAAAGGTGATGTATATAGTTTTGGTGTGTTGATTATGGAGTTGGCAACTGGGAGAAGAGCTGTGGATGGAGGAGAAGAATGTTTGGTTGAATATGTTAGACGTGTTATGGATAATGGTAGAAATGGATTAAGCCATTTTGGGCTAGTTGGTGGTGTAAAAGAGATGTTTGAGTTGCTTCAAGTTGGAATAAAGTGCACAAATGATTCACCACAAATTAGGCCTAACATGAAAGAGTTTGAAGATTCTCAATTCTGA 3177 0.3437 MSEQESDSWSFMLVCFLIIFSGKLVDGDSLVTDTKVLLNLKSYLENQTASNKGEYIRWNKNKSNPCEWSGISCNQIKGKRKWRVVSVDISASEIAGKMFDNFSQLTELTHLDVSRNTLSGEIPQDIRKCKNLVYLNLSHNILEGELNLTGLSKLQTLDLSMNRIQGELQLNFPDNCDSLITLNVSDNHFFGRVDKCFDKCLRLKYLDLSTNNISGVLSNEISRLRQFSISENFLSGIIPSQAFPMNCSLEKLDLSVNGFFGKPPKEVANCKNLEILNLSSNNFSGEIPHEIGTISGLKSLFLQNNTFSRDIPNTLLNLTNLFILDISRNNFGGEVQQIFGKFKQLRFLLLHTNSYVKGLNSSGIFTLTNLTRLELSNNNFSGPLPIEISQMSGLIFLSLSNNSFNGSIPSELGKLSKLQAIELAFNSFNGKIPPSLGNLNSLLWLMLANNSLTGEIPRELGNCSSLIWLNLANNKLTGKFPSELTRIGRNAMDTFELNHRNMVGVVAGNSECLSMRRWIPADYPPFSFVYSILTRKNCRSLWDRLLKGYGIFPMCASEPSTRSSHKFGYVQLSGNQISGEIPSEIGTMVNFSMLHLGDNKFSGEFPKEIGGLPLIVLNMTRNKFSGEIPREIGNMKCMQDLDLSWNNFSGTFPTSLVNLDQLSRFNISYNPLLSGTVPPLGHLLTFDKDSYLGDTLLDLPKFFDNTPDGKNKTFDKIRVRKPTKWYLCVALTLACLVSGLLFLTVYFLVKSSSKQGKFLKDKNQEIFSDSIKIFHLNNIVFTYADILKATSNFKEERIIGKGGFGTVYKGIFPDGREVAVKKLQREGIEGEKEFKAEMKVLSGQEFGWPHPHLVTLYGWCLYGSQKLLVYEYIGGGSLEELVTDTKTLTYKRRLEVAIDVAKALVYLHHECYPPIVHRDMKASNVLLDKEGKAKVTDFGLARVVDVGDSHVSTIVAGTVGYVAPEYGQTWHATTKGDVYSFGVLIMELATGRRAVDGGEECLVEYVRRVMDNGRNGLSHFGLVGGVKEMFELLQVGIKCTNDSPQIRPNMKEFEDSQF 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01678 1058 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1052 - -
Tsu03g01678 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 915 927 IPR008271 GO:0004672|GO:0006468
Tsu03g01678 1058 Gene3D Ribonuclease Inhibitor 246 337 IPR032675 -
Tsu03g01678 1058 SUPERFAMILY L domain-like 342 679 - -
Tsu03g01678 1058 SMART serkin_6 793 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01678 1058 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
Tsu03g01678 1058 Gene3D Transferase(Phosphotransferase) domain 1 874 1057 - -
Tsu03g01678 1058 ProSiteProfiles Protein kinase domain profile. 793 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01678 1058 Gene3D Ribonuclease Inhibitor 416 511 IPR032675 -
Tsu03g01678 1058 Gene3D Ribonuclease Inhibitor 30 174 IPR032675 -
Tsu03g01678 1058 SUPERFAMILY L domain-like 57 358 - -
Tsu03g01678 1058 SMART LRR_typ_2 151 175 IPR003591 -
Tsu03g01678 1058 SMART LRR_typ_2 439 463 IPR003591 -
Tsu03g01678 1058 SMART LRR_typ_2 367 391 IPR003591 -
Tsu03g01678 1058 SMART LRR_typ_2 294 318 IPR003591 -
Tsu03g01678 1058 SMART LRR_typ_2 105 129 IPR003591 -
Tsu03g01678 1058 Gene3D Ribonuclease Inhibitor 550 712 IPR032675 -
Tsu03g01678 1058 Pfam Leucine Rich repeat 270 286 IPR001611 GO:0005515
Tsu03g01678 1058 Pfam Leucine Rich repeat 152 167 IPR001611 GO:0005515
Tsu03g01678 1058 Gene3D Phosphorylase Kinase; domain 1 752 872 - -
Tsu03g01678 1058 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Tsu03g01678 1058 Pfam Protein kinase domain 793 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01678 1058 Gene3D Ribonuclease Inhibitor 175 245 IPR032675 -
Tsu03g01678 1058 ProSitePatterns Protein kinases ATP-binding region signature. 799 822 IPR017441 GO:0005524
Tsu03g01678 1058 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1052 - -
Tsu03g01678 1058 Gene3D Ribonuclease Inhibitor 338 415 IPR032675 -
Tsu03g01678 1058 SUPERFAMILY Protein kinase-like (PK-like) 773 1053 IPR011009 -
Tsu03g01678 1058 CDD STKc_IRAK 799 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01678 Tsu-Chr3 16984983 16990253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01678 30 1050 Receptor kinase-like Gene Family AT5G07280 31.910 4.27e-139 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Tsu03g01678 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01678 - - mtr:MTR_3g437630 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01678 03 16984983 16990253 Tsu03g01678 03 16984983 16990253 ECH