Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01674 ATGGGTTGTGTGAGTTCGAAGCAACAAGCAGTGTCGGCGACGCCGCCGGTGAATAAAAATTCTTCAGGCGGTGCGTTAGAAAGGAAAGTGAAAAGTGAGTTAGGGAGAACGAGTCATGAGAATGGTGTTTGTTGTGATTCGTTGAGTTTCAGGTTAGGGAATTTGCACAAGTTTGTTCAAAGTGAACACGTGGCAGCTGGTTGGCCTTCTTGGCTTAGCGCTGTTGCTGGTGATGCTATTCATGGTTGGATTCCTCTTCGTCCTGATGCCTTTCACAAACTCCAGAAGATTGGGCAGGGGACATATAGCAATGTATTTAAGGCGAGGGAGATTGAGACTGGGAAGATTGTGGCACTGAAGAAAGTACGGTTCGACAATTTAGACCCGGAGAGTGTGAGGTTCATGGCAAGAGAGATAACAATATTGAGAAAGCTTGATCATCCCAATATCATGAAGCTTGAAGGGTTGATTACTTCCAGATCTTCTTGTACCTTATACCTTGTATTCGAGTACATGGAGCATGACATTATAGGGCTCTTCTGCAATCCTGATATCAAGTTCAGTCAACCACAGATTAAGTGCTATATGAAGCAATTGTTATCTGCTGTTGAGTACTTTCACTCGCGAGGTGTAATGCACCGGGACATCAAAGGATCCAATCTTCTGGTGAATAATGAAGGAATATTGAAGGTGGCAGATTTTGGATTGGCGAACTTCATTAGGTCTGGGAAAAAACATCCCCTCACTAGTCGTGTTGTTACATTATGGTATCGTCCACCAGAGCTTTTGCTTGGTTCGACGAATTATGATTCATCTGTGGATCTTTGGAGTGTTGGCTGCGTCTTTGCAGAACTACTTGTTAGGATTCCTATACTTCAGGGGAAAACTGAGGTAGTAGAACAATTACACAAAATTTTCAAGCTTTGTGGCTCACCACCTGATGAATACTGGAAAAGGATTGGACTTCCTCGTGCAACTTTGATATATGATGGTTGCTTCGAAGAGCACTTTAAAGATTTGCCTCCAACCAGTGTACATTTGCTACAAACTCTTCTGTCTGTTGAACCTTACAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAAAACACAACCTTATGCATGTGATCCATCAAGCTTGCCGAAATATCCGCCTAGCAAGGAAATTGATGCAAGACAAAGGGCTGCAGAGGAGGCAAGGAAAAAGAATGGAAGAGTTCGTCGAACCGAAACAATGAAACCATCAAGAAAGCCACAGGACTTAGCAAATCAAACGCAAAATTCTCAAAAGGTCAAGAGTAGATCTTTCCGAATCCTCGAAGAAGATAAGAGTAACTTTGTTTTGAAGGCACAAAAACCATCCAGTGATATACATGAATATGCTTCACATATGAAGAATGCATCTCAAGGAGATATTCCCTTTTCTGGACAATTACAAATATCAAATTCAAGTGGCTTTGCTTGGGCAAAAAGCCGGAAAGACGACACTTCAATTCGATCACGTTGTCAATCTTTTTCTAAAGGACATAGTTTCAATGCTTTAGATTCTTCTGTATTAAACAGTAGGAATAATTTGGAAACAATAAATCATGATAATAAGGAGTTTTGTGGGAGAAATACCAACTCTAGACACTTTGAAATTTCTAAATCTTCAAAACAAAATCAGTGGAGTAGGTTCGATCGTCTAGAGTCATTCGATGCTTCTGATGAGTACCAAGAAGATTCATTATCCAAAAGAAGTAATCTGAGTTACCAGGATCAAGGAGAAAAGATTGGCTTTTCAGGACCCCTACTGTCTAAAATGCACACGGTTGACGAGCTCTTAGAAAGGAACGAGCGTCACATCCGGCGAACGGTCCGAAGATCATGGTTTCCGAAAGGTAAGAAAAATGGGCAGAGAATGTAG 1914 0.4154 MGCVSSKQQAVSATPPVNKNSSGGALERKVKSELGRTSHENGVCCDSLSFRLGNLHKFVQSEHVAAGWPSWLSAVAGDAIHGWIPLRPDAFHKLQKIGQGTYSNVFKAREIETGKIVALKKVRFDNLDPESVRFMAREITILRKLDHPNIMKLEGLITSRSSCTLYLVFEYMEHDIIGLFCNPDIKFSQPQIKCYMKQLLSAVEYFHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFIRSGKKHPLTSRVVTLWYRPPELLLGSTNYDSSVDLWSVGCVFAELLVRIPILQGKTEVVEQLHKIFKLCGSPPDEYWKRIGLPRATLIYDGCFEEHFKDLPPTSVHLLQTLLSVEPYKRGTATSALSSEYFKTQPYACDPSSLPKYPPSKEIDARQRAAEEARKKNGRVRRTETMKPSRKPQDLANQTQNSQKVKSRSFRILEEDKSNFVLKAQKPSSDIHEYASHMKNASQGDIPFSGQLQISNSSGFAWAKSRKDDTSIRSRCQSFSKGHSFNALDSSVLNSRNNLETINHDNKEFCGRNTNSRHFEISKSSKQNQWSRFDRLESFDASDEYQEDSLSKRSNLSYQDQGEKIGFSGPLLSKMHTVDELLERNERHIRRTVRRSWFPKGKKNGQRM 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01674 637 MobiDBLite consensus disorder prediction 419 436 - -
Tsu03g01674 637 SUPERFAMILY Protein kinase-like (PK-like) 85 378 IPR011009 -
Tsu03g01674 637 Pfam Protein kinase domain 91 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01674 637 MobiDBLite consensus disorder prediction 381 436 - -
Tsu03g01674 637 MobiDBLite consensus disorder prediction 390 418 - -
Tsu03g01674 637 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Tsu03g01674 637 CDD STKc_CDK9_like 91 371 - -
Tsu03g01674 637 ProSiteProfiles Protein kinase domain profile. 91 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01674 637 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 26 596 - -
Tsu03g01674 637 MobiDBLite consensus disorder prediction 1 26 - -
Tsu03g01674 637 MobiDBLite consensus disorder prediction 1 21 - -
Tsu03g01674 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Tsu03g01674 637 SMART serkin_6 91 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01674 637 Gene3D Phosphorylase Kinase; domain 1 79 173 - -
Tsu03g01674 637 Gene3D Transferase(Phosphotransferase) domain 1 174 411 - -
Tsu03g01674 637 PANTHER CELL DIVISION PROTEIN KINASE 26 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01674 Tsu-Chr3 16949877 16957329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01674 89 405 Core Cell Cycle Gene Families AT5G10270 47.522 1.17e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu03g01674 Pkinase 2.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01674 - - gmx:100803328 919.842