Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01668 atgGCCACTCAAATCCCTTCCGTTTCTCTCGATCATTCACTTCTCGACGTCGACGACTACGTTTTGGAAAATGGACCAGAAGGATTGGCATGGGACACATTTCATTATGTTTACGAGCTTGTACAAAAGGGAAATTTGGCCTTTCGAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAGCATCAAATCTAGTGATCCAATCATCCTCGGCAATAGAAGTGCAGCTTATATTAGGATTAGCCAATATTTAATGCAtagatcatcatcatcctcagaaCATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGATTGAAAGATGCTGCAAAGTTCGTGGAACTCCAAAGTAATTCAGTAAAACCATACCTTTTGAAGGCCAATGCTCTTCTTCTATTAGAGAAATATGATGTGGCTCAGGATGTTATTCTTTCAGGACTTCAAGTTGATCCATTCAGTAATTCCCTTCGGGAATGTCTTCAAAAAGTGGAAAGAGTATCATCTAGTTCAACAGGGAGAGGTGCACACGGACAACCAGAGCGCAATGATGACTTTGATTGCACTCTGTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCCTGTGGACATTCTTTTTGCCGCTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGCTCATTAGCCCCAGAACATGTTCAATTAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGCACGACAGTTTAGTTAACATTGGTGTAGATATGCTCCCTCTTTTTGTCATGGATGTTGTCTTACCATGTCAAAGGTTTCCACTAAATATATTTGAACCTCGTTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCGGCGGATGGGAATGGTTATAATAGATTCTTCAACGGGTTCATTAGCAGAGTTTGGCTGTGAAGTAGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGTTTTTATATAGAgATTGAAGGTCGTAGGAGATTTCGCAACCTCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACAGGATATTATGCCGCCAGAAGGgacaaaagaaaaagaggatTTACAGGAATTGACATATAATGCCGCAGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGATTAGAGAAACTCGTGAATGTTGAAGGAATGATACCCTCATTAAGAGACCCCGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAATCGGAGGCCTTCAGAAAGATTGGATCTCCTACGGATTAGAGACACTACAGAGAGAATTAGACGAGGCTTGATATTTCTTCGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1458 0.4108 MATQIPSVSLDHSLLDVDDYVLENGPEGLAWDTFHYVYELVQKGNLAFRENRMEEAINFYSRANSIKSSDPIILGNRSAAYIRISQYLMHRSSSSSEHRPLSGLDPTTLAELGLKDAAKFVELQSNSVKPYLLKANALLLLEKYDVAQDVILSGLQVDPFSNSLRECLQKVERVSSSSTGRGAHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLLISPRTCSISVTLKSIIQKNFPEEYAERKQEHDSLVNIGVDMLPLFVMDVVLPCQRFPLNIFEPRYRLMVRRIMEGNRRMGMVIIDSSTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRNLRSWDQDGYRVAEVEWIQDIMPPEGTKEKEDLQELTYNAAESARSWIGRAKEAARQDQRRLEKLVNVEGMIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01668 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Tsu03g01668 485 Gene3D - 411 477 - -
Tsu03g01668 485 SMART ring_2 195 232 IPR001841 -
Tsu03g01668 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 475 IPR003111 -
Tsu03g01668 485 PANTHER RING FINGER PROTEIN 127 13 478 - -
Tsu03g01668 485 SUPERFAMILY TPR-like 36 168 IPR011990 GO:0005515
Tsu03g01668 485 Gene3D - 277 379 IPR046336 -
Tsu03g01668 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 274 IPR013083 -
Tsu03g01668 485 SUPERFAMILY RING/U-box 190 258 - -
Tsu03g01668 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Tsu03g01668 485 Gene3D Tetratricopeptide repeat domain 36 174 IPR011990 GO:0005515
Tsu03g01668 485 SMART lon_5 278 477 IPR003111 -
Tsu03g01668 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Tsu03g01668 485 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 13 478 - -
Tsu03g01668 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Tsu03g01668 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01668 186 236 C3H Transcription Factor Family AT1G74990 35.185 3.92e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01668 - - gmx:100802277 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01668 03 16821270 16832146 Tsu03g01668 03 16821270 16832146 ECH