Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01664 ATGGAAGCGGTTGTGGTTGACGTCGGTTCTAAACTTCTCAAAGCTGGTTTTGCAATTCCTGATCAGACTCCTGGCATGATAATTCCCACTCAGATGAAACAGATGCTTGATGATGGTTCAATCACCTATGGTTCACCAGTTGATGATGTCACCATTGATCCAGTCGCCAACAAGGAATATTTGGTGCAACTAATGTTTGAAAACTTCAAAATATCGGGGTTTTATGCATCAGAACAATCAGTATTATCGCTGTATGCTGTGGGACGTATCTCAGGGTGCACTGTTGATATTGGACATGGAAAAATAGATATTGTGCTTGTGATTGAGGGTGCTGTTCACCACCTTGGTTCAAGAAGATTTGAGTTTGGTGGTACTAATCTAACTAATTTCCTGTCTCAAGAACATGGCAAATCAAATCCACAAGTAAATATCAGCATGTCTGATGTGGAGAAAATAAAAGAGCAATATTCGTGCTCTGTTGAAGATGAGTTAGCTTATCAGAAAACTCAGTATTCTTGTCCTGTGGAGAAACATACGCTTCCTGATGGACAGGTCTGCTTTCCAAATTCTATGATAGTTTTGACTTGTGATACTGACTAA 600 0.3983 MEAVVVDVGSKLLKAGFAIPDQTPGMIIPTQMKQMLDDGSITYGSPVDDVTIDPVANKEYLVQLMFENFKISGFYASEQSVLSLYAVGRISGCTVDIGHGKIDIVLVIEGAVHHLGSRRFEFGGTNLTNFLSQEHGKSNPQVNISMSDVEKIKEQYSCSVEDELAYQKTQYSCPVEKHTLPDGQVCFPNSMIVLTCDTD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01664 199 Gene3D - 80 121 - -
Tsu03g01664 199 Gene3D - 52 79 - -
Tsu03g01664 199 PANTHER ACTIN 1 56 IPR004000 -
Tsu03g01664 199 PANTHER ACTIN 52 185 IPR004000 -
Tsu03g01664 199 SUPERFAMILY Actin-like ATPase domain 2 95 IPR043129 -
Tsu03g01664 199 SUPERFAMILY Actin-like ATPase domain 88 190 IPR043129 -
Tsu03g01664 199 CDD NBD_sugar-kinase_HSP70_actin 41 123 - -
Tsu03g01664 199 Pfam Actin 53 186 IPR004000 -
Tsu03g01664 199 PRINTS Actin signature 57 70 IPR004000 -
Tsu03g01664 199 PRINTS Actin signature 82 101 IPR004000 -
Tsu03g01664 199 PRINTS Actin signature 174 190 IPR004000 -
Tsu03g01664 199 Gene3D Actin; Chain A, domain 4 122 186 - -
Tsu03g01664 199 PANTHER BNACNNG31150D PROTEIN 1 56 - -
Tsu03g01664 199 PANTHER BNACNNG31150D PROTEIN 52 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01664 Tsu-Chr3 16781134 16783769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01664 49 185 Cytoskeleton Gene Families AT3G12110 33.803 2.02e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01664 K16615 - gmx:100813266 299.671