Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01652 atgaagatgaagaagattcaTCTCAGCAAGATCTATTCATttaaatttggtaaaaaaacaaagtttagAAGAGAGCATTCACAGATTGGGAGACAAGGGTATTCTAGAGTTGTTTTATGCAATGAATTACAAGATAGTTTTGAATCAGATTTGATTAGGAATTATGCTGATAATTCTGTTAGGTCAACTAAATATACTGTTGCGAGTTTCTTACCGAAGTCATTGTTTGAGCAGTTTAGGAGGATAGCTAATTTCTATTTCCTTGTTGTTGGTATCTTAGCTTTCACAAAACTTGCTCCTTATACTGCTGTTAGTGCTATTCTTCCTTTATGTATTATCGTTGGAGCAACTATGGTGAAGGAAGGTATTGAAGATTTGCGTCGGAAAAAACAGGATATTGAGGTGAACAATAGAAAGGTTATATTTCATAAAGGTGATGGTAATTTTGAATATACGGAGTGGAAGAATCTCAGGGTAGGAAATATAGTGAAGATAAAGAAGGATGAATTCTTCCCTGCCGACCTTCTACTGCTTTCGTCCAGTTACGACGATGCAGTCTGCTACGTTGAAACCATGAACTTGGATGGTGAGACAAATTTGAAGCTAAAACAAGGTTTGGAAGTAACTTCTTCGTTAAATGAGGAAGATAAACTCCATGATTTCAAAGCTACCGTCAAATGTGAAGATCCAAATGCAAATTTGTACTCGTTTGTTGGGAGCATCGAATTTGAAGGGCAAAAATATCCACTTTCTCCTCAGCAGCTTCTTCTCCGAGACTCAAAACTTCGTAATACAGACTATGTATTCGGAGCAGTCATCTTTACTGGCCATGACACAAAGGTTATTCAAAACACTACTGACCCTCCTTCGAAAAGAAGCAAAATCGAGAAGAAGATGGATAAGATTATCTACTTCTTATTTGGTGTTTTGTTTGTAATTGCTTTCGTTGGATCTATAATCTTTGGAATCGTAACTAAACGTGACTTGCACAACGGATTTATGAAAAGATGGTATCTGAGACCAGATGATTCCACCATTTTCTTTGATCCTAAAAGAGTCGTCGTAGCTTCTGTATATCATTTCTTGACGGCTTTAATGCTATATAACTTCTTCATTCCCATCTCCTTGTATTTCTCGATTGAATTGGTCAAAATCCTTCAAAGCATCTTCATTAATCAAGATATCAATATGTACTATGAAGAACTGGACAAACCAGCTCTTGCACGTACTTCAAACTTGAATGAAGAACTCGGCCAAATTGACACGATCCTTTCTGATAAAACTGGAACTTTGACTTGCAACTCGATGGAGTTCATCAAATGTTCTGTTGCAGGGGTAGCTTATGGCCGTGTTGTTACAGAGGTTGAACAAGCCATTGGCAGTATAAGTAATAGTTCACCTATGATTCATGAACGGATTACAGTTGATACCAGAGAAGCTCATGATCGAAAAGAACTGATCAAAGGTTTTAACTTTATAGATGAAAGGATAATGAACGGAAACTGGGTTAATGAGCCTCGTGCAGATGTTATACAGAAGTTTTTCCGATTATTGGCTGTTTGTCATACTGCCATACCAGAAGTGGATGATGATACCGGAAGAGTCACATATGAAGCTGAATCTCCTGATGAAGCAGCATTTGTGATTGCTGCTAGAGAAGTTGGTTTCACATTCTACAAAAGGAGTCAGAATAGTTTATCGATGAAAGAGTTGGATCCTGTTTCTGGCAATGATGTTGAAagGACATACAAGATTCTCCACGTTTTAGAATTCAATAGTTCAAGGAAGCGAATGTCGGTGATAGTTAAAGATGAAGAAGGGAGAATTTTACTACTCTGCAAAGGCGCCGACAGTGTCATGTTTGAAAGGCTTGCGCTAAATGGGAGAGATTTTGAGGAGAAAACTTTGGAACATGTAGGTGAATATGCTGATGCAGGTCTAAGAACCCTGATACTAGCCTATCGTGAActtgatgatgaagaatataACGAGTTTGACAATAAATTTACGGAAGTAAAAAATTCTATCACCGTAGATCGTGAATCGCTGATTGAAGAACTATCAGATAAGATTGAGAGGAGTCTAGTCCTTCTTGGTGCCACTGCTGTTGAAGACAAGCTCCAAGACgggGTTCCTGAGTGTATTGAAAAGCTTGCGCAAGCTAGAATTAAGATATGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTCTCTTGTCGCTTGCTTCGACAAGGAATGAAACAGATTATAATTCATTTGGAGATTCCAGAAATTCAAGCATTGGAGAAGCATGAAGACAAGATGGCTACCATCAAGGCATCAAGGGAAAGTGTGTATCAACAGATATCTGAAGGTTCTAAACTGCTTTCTGCATCTAAAGGGACCTCTCAGCAAACATTTGCTCTGATAATTGATGGGAAATCACTAGTTTATGCTTTAGAGGATGGTATGAAGAACAAATTTTTAGAGCTTGCAACTCACTGTGCATCTGTTATCTGTTGTCGCTCATCGCCAAAGCAAAAGGCGCTGGTTACTAGACTGGTCAAAGAAGGAACTGGTAAGACAACATTAGCTATCGGTGATGGAGCTAATGATGTAGGAATGATTCAAGAAGCTGATGTAGGTGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCTGTCATGTCTAGCGATATTGCAATTGCGCAGTTCCGGTATTTGGAAAGACTGCTTCTTGTGCATGGACATTGGTGTTACCGGAGGATGTCCTCAATGATATGTTTCTTTTTCTACAAGAACATTACATTTGGTTTCACTATATTCTTATACGAAGTGTATGCATCGTTCTCTGGACAGCCTGCATACAACGACTGGTTTTTATCTTTCTATAGTGTCTTGTTTTCTTCACTTCCTGTCATTGCGCTTGGGGTCTTTGACCAAGATGTATCTGCCAGGTACTGCCAGAAGTTTCCTATCTTATACCAAGAAGGTGTACAAAATGTCCTATTTAGTTGGCGCCGAATTCTAAGCTGGATGCTCAACGGATTCGTCAGTGCCATaacaattttcttcttctgcACAAAAGCGATAGGCCTTCAAGCCTTCGACGAGAATGGAAAAACCGCCGGAAAAGACATGCTGGGAGCAACCATGTATACTTGCGTTGTTTGGGTTGTAAACCTACAAATGGCCCTTGCGGTGCAATACTTCACCTTGATACAACATATTGCCATTTGGGGTTCTATTGCTCTTTGGCATTTCTTCATGTTTGTTTATGGATCATTGCCTTCAGGCTTTTCAACAAATGCTTACAAAGTCTTTGTTGAGACTCTTGCTCCATCTCCTTCCTTTTGgattgtcacattatttgtgGCGGTTTCTTCACTTATACCGTACTTTTCGTGCTCCACGATTAAAATGTGGTTGTTTCCCATGCATCATGAAAGGATACAATGGATGAGGTATGAGAGCAAGAAGACTAATGAACCTGAATAG 3486 0.3824 MKMKKIHLSKIYSFKFGKKTKFRREHSQIGRQGYSRVVLCNELQDSFESDLIRNYADNSVRSTKYTVASFLPKSLFEQFRRIANFYFLVVGILAFTKLAPYTAVSAILPLCIIVGATMVKEGIEDLRRKKQDIEVNNRKVIFHKGDGNFEYTEWKNLRVGNIVKIKKDEFFPADLLLLSSSYDDAVCYVETMNLDGETNLKLKQGLEVTSSLNEEDKLHDFKATVKCEDPNANLYSFVGSIEFEGQKYPLSPQQLLLRDSKLRNTDYVFGAVIFTGHDTKVIQNTTDPPSKRSKIEKKMDKIIYFLFGVLFVIAFVGSIIFGIVTKRDLHNGFMKRWYLRPDDSTIFFDPKRVVVASVYHFLTALMLYNFFIPISLYFSIELVKILQSIFINQDINMYYEELDKPALARTSNLNEELGQIDTILSDKTGTLTCNSMEFIKCSVAGVAYGRVVTEVEQAIGSISNSSPMIHERITVDTREAHDRKELIKGFNFIDERIMNGNWVNEPRADVIQKFFRLLAVCHTAIPEVDDDTGRVTYEAESPDEAAFVIAAREVGFTFYKRSQNSLSMKELDPVSGNDVERTYKILHVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLALNGRDFEEKTLEHVGEYADAGLRTLILAYRELDDEEYNEFDNKFTEVKNSITVDRESLIEELSDKIERSLVLLGATAVEDKLQDGVPECIEKLAQARIKIWVLTGDKMETAINIGFSCRLLRQGMKQIIIHLEIPEIQALEKHEDKMATIKASRESVYQQISEGSKLLSASKGTSQQTFALIIDGKSLVYALEDGMKNKFLELATHCASVICCRSSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADVGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICFFFYKNITFGFTIFLYEVYASFSGQPAYNDWFLSFYSVLFSSLPVIALGVFDQDVSARYCQKFPILYQEGVQNVLFSWRRILSWMLNGFVSAITIFFFCTKAIGLQAFDENGKTAGKDMLGATMYTCVVWVVNLQMALAVQYFTLIQHIAIWGSIALWHFFMFVYGSLPSGFSTNAYKVFVETLAPSPSFWIVTLFVAVSSLIPYFSCSTIKMWLFPMHHERIQWMRYESKKTNEPE 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01652 1161 Gene3D - 694 903 IPR023214 -
Tsu03g01652 1161 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 666 IPR023299 GO:0000166
Tsu03g01652 1161 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Tsu03g01652 1161 SFLD Haloacid Dehalogenase 406 914 - -
Tsu03g01652 1161 SFLD p-type atpase 406 914 IPR044492 -
Tsu03g01652 1161 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Tsu03g01652 1161 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Tsu03g01652 1161 Gene3D - 117 286 - -
Tsu03g01652 1161 SUPERFAMILY Calcium ATPase, transduction domain A 142 283 IPR008250 -
Tsu03g01652 1161 CDD P-type_ATPase_APLT_Dnf-like 57 1023 - -
Tsu03g01652 1161 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 835 945 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu03g01652 1161 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1140 IPR023298 -
Tsu03g01652 1161 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1158 - -
Tsu03g01652 1161 Gene3D - 550 672 IPR023299 GO:0000166
Tsu03g01652 1161 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu03g01652 1161 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1158 - -
Tsu03g01652 1161 SUPERFAMILY HAD-like 419 918 IPR036412 -
Tsu03g01652 1161 Pfam Phospholipid-translocating ATPase N-terminal 52 106 IPR032631 -
Tsu03g01652 1161 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Tsu03g01652 1161 Pfam Cation transport ATPase (P-type) 530 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01652 Tsu-Chr3 16689683 16696138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01652 6 1161 Primary Pumps ATPases AT1G68710 70.514 0.0 1748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01652 K01530 - gmx:100798329 1888.23