Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01646 ATGTCCGCGCAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCGGACTATCTAGTAAAGCCTTTACGCACAAACGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTTCAGAGAAGAACATGTTAAATTATGACTTTGATCAGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCTGATGACACTGATGATAGGTCCAAAAGAAGCACTATTCCAGAGACAGAAATATCAGTCCAGCAAGAGCTAGAGTCTACTATTGCAAatgctgctgctgttgttgaGGAACCTCGAGATGATCATGCATCAGAATGTCAGTCAGATGTCCATGGAATAAATGATCAGCGAAAAGCACACTTTTCATCTGGTCCAAAGAAGAGTGAACTAAGGATTGGGGTTGGAGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTTAAGGGAAACCTTGAAGGGATTGTTCATGTTGATAACAATGCTGCGGAACATTTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACATGGGGTTAGTAGCGACCTCGAAATACGCGAAAATGGAGGAGACACATGTGAAAGTCAATCGCAAGAAGAATTGCCTAGTAGCAATAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCACCTGCATCTATGGAAGCTTCACAGCAAAACCGTAACAACGAAGAAAATTTGCATCACAACAATCTGATGCATCCAAGAAATGAGACTCGATCTGAGCTTGAAATATCTGGCATGGCTGCACAACATGCATATCCATATTATATGCCAGGAGTTGTTAACCATGCTATGATGACTTCATCGGCACAAATGTATCAAAAGAATGTCCAGGACCTTCAGAATCATGCTGCTACATCCATGTTTGGTCACTACAATCATGTTGCACAAGGCGGTCCTCATGGCACTGGTATGATGTCATACCCATATTACCCATCAACCATGTGCTTACAACCCGGTCAGATTCCTTCAGGTCATTCATGGCcatccttcagaggctcaagtTCATCCGAATCAAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCGTTGATTAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAATCGGAAACAACTTGCTGAAAGACGGCCTCGAGTAAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAATGGACAGCCTCCTTCCATGGAATACAATCAAGATGGTGAAGACGAAGATGACCTAGGAGCTTGA 1338 0.4096 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLSEKNMLNYDFDQVASEPSDANTNSTTLFSDDTDDRSKRSTIPETEISVQQELESTIANAAAVVEEPRDDHASECQSDVHGINDQRKAHFSSGPKKSELRIGVGESSAFFTYVKASMLKGNLEGIVHVDNNAAEHLRMEVMHQACAQHGVSSDLEIRENGGDTCESQSQEELPSSNSIPDSLSIERSCTPPASMEASQQNRNNEENLHHNNLMHPRNETRSELEISGMAAQHAYPYYMPGVVNHAMMTSSAQMYQKNVQDLQNHAATSMFGHYNHVAQGGPHGTGMMSYPYYPSTMCLQPGQIPSGHSWPSFRGSSSSESKLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGQPPSMEYNQDGEDEDDLGA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01646 445 Gene3D - 1 139 - -
Tsu03g01646 445 SUPERFAMILY CheY-like 1 46 IPR011006 -
Tsu03g01646 445 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Tsu03g01646 445 MobiDBLite consensus disorder prediction 61 86 - -
Tsu03g01646 445 Pfam CCT motif 374 416 IPR010402 GO:0005515
Tsu03g01646 445 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 424 IPR045279 GO:0009736
Tsu03g01646 445 MobiDBLite consensus disorder prediction 61 76 - -
Tsu03g01646 445 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
Tsu03g01646 445 MobiDBLite consensus disorder prediction 207 252 - -
Tsu03g01646 445 MobiDBLite consensus disorder prediction 419 445 - -
Tsu03g01646 445 MobiDBLite consensus disorder prediction 202 256 - -
Tsu03g01646 445 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01646 Tsu-Chr3 16643528 16649875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01646 1 434 Response Regulator Gene Family AT5G61380 45.349 3.18e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu03g01646 CCT 2.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01646 K12127 - gmx:100271889 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01646 03 16643528 16649875 Tsu03g01646 03 16643528 16649875 ECH