Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01632 ATGAAGCAATCAAAGGAAGAATCACAACCAGAATCCCCAATTCAAACTGATGCAGATACAGAGGACCCAATAATCACTAAGAATATTAATAAAGACGATGAAGAAGATCTTGACATTTATCTGCTATGTTTCCTGCTGATGCTCCTCCCAAAATTGCTAAGATGCATATCAGTGGTTACAAAAATGTTTGTTGGTGAAATTGTGGAAACAGCTAGAATAATTATGGAAGAGAGGAAGGAATCTGGGCCGATCCGGCCAAGTCATCTGAGAGAAGCACATAGACGACTAAAGCTTGAAGGAAAAGCCTTTAAGAGAACGGCGGGAAAGGTTTTTGATCCCGGTGTCCATCGTCCAGCTTATCGAATTACCTGGAATGAGTTATCCAATGTGCAATATACTTCAGAAAATCTTTTCTTTCTACCTTTTCCTCCATCAACTATTATGTGTAAGGAAGAGGATCAAATGGATTTGCCACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTAGTCATTACCTTTTAAGAAAGGTAACTGACACAAACTTTTCTGCTAAGGTCATTGGAGAAGTTGATTTAAACAAATCTGAACCTTGGGATTTGCCatGGAAAGCAAAAATGGGTGAAAAAGaatggtattttttttgtgtgagaGATAGAAAGTATCCAACTGGTTTGAGGACTAATAGAGCAACTGAAGCTGGATATTGGAAAGCAACAGGAAAAGATAAGGAAATTTATAGAGGAAAATCTCTTGTTGGAATGAAGAAAACTCTTGTTTTCTATAAAGGAAGAGCACCTAAAGGAGAGAAAAGTAATTGGGTGATGCATGAATATAGACTTGATGGTAAATTGTCTATTCATAATCTTCCAAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGGTATATCAGAAGAGTTTATCAAGCAAAAAGACATGTTTTTCTCCTGGGATAATGAGGTTAAACTCTTTTGGAAATGAACTTGGTTCTTCTATTCTTCCACCACTCACAGAATCTTCACCTTATTCTATTGACAAAATCAAATCACCTTACGTGTCCTGCTTCTCCAATCCAATTGAAAGAAACCAAGTTGGAATCTTTAATACCTTTAGTAACAACCCTTTTGAGGTTCATTCAAATCATTCAATTAACCTTCCAAAAAACACACTTTCTATTGGTTCATTTTACTCTAATCATCAAGATGTTCAAGCCACACCAAATTTGCCATTATCTGGTTCTGTTTATAACAATGGATCAAACTTTGAGAATCAGCAGCATCTACCTGTTTCAACTGCACCAATTGATATATCTACCTTGTGGAATTATTAA 1335 0.3596 MKQSKEESQPESPIQTDADTEDPIITKNINKDDEEDLDIYLLCFLLMLLPKLLRCISVVTKMFVGEIVETARIIMEERKESGPIRPSHLREAHRRLKLEGKAFKRTAGKVFDPGVHRPAYRITWNELSNVQYTSENLFFLPFPPSTIMCKEEDQMDLPPGFRFHPTDEELISHYLLRKVTDTNFSAKVIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLDGKLSIHNLPKTAKNEWVICRVYQKSLSSKKTCFSPGIMRLNSFGNELGSSILPPLTESSPYSIDKIKSPYVSCFSNPIERNQVGIFNTFSNNPFEVHSNHSINLPKNTLSIGSFYSNHQDVQATPNLPLSGSVYNNGSNFENQQHLPVSTAPIDISTLWNY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01632 444 MobiDBLite consensus disorder prediction 8 23 - -
Tsu03g01632 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 146 419 - -
Tsu03g01632 444 Pfam hTAFII28-like protein conserved region 54 95 IPR006809 GO:0005634|GO:0006367
Tsu03g01632 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 146 419 - -
Tsu03g01632 444 SUPERFAMILY NAC domain 153 307 IPR036093 GO:0003677|GO:0006355
Tsu03g01632 444 MobiDBLite consensus disorder prediction 1 27 - -
Tsu03g01632 444 Gene3D Histone, subunit A 49 102 IPR009072 GO:0046982
Tsu03g01632 444 ProSiteProfiles NAC domain profile. 157 307 IPR003441 GO:0003677|GO:0006355
Tsu03g01632 444 SUPERFAMILY Histone-fold 55 101 IPR009072 GO:0046982
Tsu03g01632 444 Pfam No apical meristem (NAM) protein 158 282 IPR003441 GO:0003677|GO:0006355
Tsu03g01632 444 Gene3D NAC domain 166 310 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01632 Tsu-Chr3 16354982 16362243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01632 155 444 NAC Transcription Factor Family AT5G07680 57.143 1.11e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu03g01632 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01632 - - gmx:100170719 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03708 04 46134017 46135987 Tsu03g01632 03 16354982 16362243 ECH
Tsu03g01632 03 16354982 16362243 Tsu03g01632 03 16354982 16362243 ECH