Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01624 ATGGCTCGTTTGGTTCTTCTCTTGGTTGGATTAGTTCTCTCCATAGGATCTACTGTCTATGCATCAAATGATGGTTGGATTGATGCTCATGCTACCTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAAGGGTATGGAACCAACACTGCTGCTTTAAGCACTGCTTTGTTCAATAGTGGATCAAGCTGTGGAGCATGTTTTGAGATTAAGTGTGTTAATGACCAAAGATGGTGTCTTCCAAACTCAATCGTTGTCACTGCAACAaatttttgtccaccaaacaacGCACTCCCAAATAATGCTGGTGGGTGGTGTAACCCTCCACTTCACCATTTTGATCTCGCTCAACCAgtttttgaacaaattgctcAATATAAAGCTGGAATTGTACCTGTTGCTTACAAAAGGGTCCCTTGCCAAAAGAAAGGAGGCATAAGATTCACAATCAATGGTCATTCATACTTTAACCTAGTACTAATTACCAACGTTGGAGGTGCTGGTGATGTTACTGCAGTTTCAATCAAAGGTTCAAAAACTAATTGGCAACCAATGTCTAGAAATTGGGGTCAAAATTGGCAAAGCAACTCTCACCTCGACGGACAAAGTCTCTCCTTCAAAGTCACTTCTAGTGATGGTCGTACCGTGGTTGCTAATAATGTCGCACCAGATGGATGGTCCTTTGGTCAGACCTTCACTGGCATTCAGTTCTGA 747 0.4137 MARLVLLLVGLVLSIGSTVYASNDGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGSSCGACFEIKCVNDQRWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFEQIAQYKAGIVPVAYKRVPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSKTNWQPMSRNWGQNWQSNSHLDGQSLSFKVTSSDGRTVVANNVAPDGWSFGQTFTGIQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01624 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Tsu03g01624 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Tsu03g01624 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Tsu03g01624 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Tsu03g01624 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Tsu03g01624 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Tsu03g01624 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Tsu03g01624 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Tsu03g01624 248 Gene3D - 13 152 IPR036908 -
Tsu03g01624 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Tsu03g01624 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Tsu03g01624 248 Gene3D - 154 248 IPR036749 -
Tsu03g01624 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Tsu03g01624 248 PANTHER EXPANSIN 8 248 - -
Tsu03g01624 248 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Tsu03g01624 248 SMART dpbb_1 61 146 IPR007112 -
Tsu03g01624 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Tsu03g01624 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Tsu03g01624 248 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01624 Tsu-Chr3 16194934 16197323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01624 1 248 Expansin Gene Family AT2G03090 76.000 1.41e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01624 - K20628 egr:104419919 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00165 04 1581847 1584267 Tsu03g01624 03 16194934 16197323 ECH
Tsu06g02121 06 26605037 26607716 Tsu03g01624 03 16194934 16197323 ECH
Tsu03g01624 03 16194934 16197323 Tsu03g01624 03 16194934 16197323 ECH
Tsu05g01898 05 20867566 20870093 Tsu03g01624 03 16194934 16197323 ECH