Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01614 ATGGAGAATATTGATCAACACACGGTTTGGAAATATGATCATGCAATACAAGATTATGATCCATTTGCATTTCCTTTACCATTACCTTCATatgatgaaaataataataatctttatAGAGGAAATACAAGTGATGGTTCTTTTTCAAAAGATTGGTCACATTATGGATTTCCCATGCTAGATACCAATTCTTATGTCCCTTTCAAGGATAATTATTTTCCTGAATTTCAATATGAAACTGATCTTACTGAATTGCCAACACAAATAAGTGTAGAAgACTTTGATttatatgatgctaaaaatgTACTTCCAATGTTGAACGAAGTTGATGCTGGATTTTATTCTGATAATAATGTGTTTTCTATAAGCAACAATATTGTAGAAAATAATGCAAAGGAAATTATGAAGGGTAAGCGTTGTAGAGAAGAGAATAGTGCAAGAATGTTAACAAGGAAGACAATTTCTGAGTACTTTTATATGCCAATTTCACAAGCTGCAAGAGAGCTTAATGTTGGTCTTACACATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCACATAGGAAACTAATGAGTCTTCAAACCCTCATAAAGAATGTTCAAGAGCAGGGTAatgaaagtgatgaaaaaataagGAATGCAGTTGAAATATTGCAAGAAGAAATGAAGAAGGTAGAGGAAAAGCCAGATTTGCAACTtgaagaaaacacaaaaaggcTAAGACAAGCATGTTTCAAGGCCAATTACAAGAAGAGAAGGCTCATGGTCATGAGATTAATGGATAATCAACAGTCTTTAGTCAGTGAAAGTGTTAATGATCAGATAAGggtttaa 843 0.3037 MENIDQHTVWKYDHAIQDYDPFAFPLPLPSYDENNNNLYRGNTSDGSFSKDWSHYGFPMLDTNSYVPFKDNYFPEFQYETDLTELPTQISVEDFDLYDAKNVLPMLNEVDAGFYSDNNVFSISNNIVENNAKEIMKGKRCREENSARMLTRKTISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGNESDEKIRNAVEILQEEMKKVEEKPDLQLEENTKRLRQACFKANYKKRRLMVMRLMDNQQSLVSESVNDQIRV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01614 280 ProSiteProfiles RWP-RK domain profile. 132 217 IPR003035 -
Tsu03g01614 280 PANTHER PROTEIN RKD1-RELATED 123 268 - -
Tsu03g01614 280 Pfam RWP-RK domain 149 196 IPR003035 -
Tsu03g01614 280 Coils Coil 211 231 - -
Tsu03g01614 280 PANTHER PROTEIN RKD4 123 268 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01614 Tsu-Chr3 15982593 15984284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01614 138 256 AtRKD Transcription Factor Family AT1G18790 61.719 9.37e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu03g01614 RWP-RK 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01614 - - mtr:MTR_3g435550 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01614 03 15982593 15984284 Tsu03g01614 03 15982593 15984284 ECH
Tsu04g03697 04 46047195 46048458 Tsu03g01614 03 15982593 15984284 PCT