Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01610 ATGAAGAAGAGACAAGTTGTAGCTAAAACTTCATCTTCAATTACAAGAAATATTCGATATGGAGAGTGCCAGAAGAATCATGCGGCGAATATCGGAGGATATGCTGTTGATGGTTGCAGGGAGTTCATGGCTAGCAATGGAGAAGGAACAAGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCATAGGaactttcataaaaaagaagtgCAAACTGAAGTTGTTTGTGAGTACTCTCCACCTAATTATGGTCGCTAA 258 0.3915 MKKRQVVAKTSSSITRNIRYGECQKNHAANIGGYAVDGCREFMASNGEGTSGALTCAACGCHRNFHKKEVQTEVVCEYSPPNYGR 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01610 85 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Tsu03g01610 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 82 - -
Tsu03g01610 85 PANTHER BNAA09G44460D PROTEIN 3 82 - -
Tsu03g01610 85 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Tsu03g01610 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01610 Tsu-Chr3 15891912 15892169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01610 1 82 Zinc finger-homeobox gene family AT1G18835 73.864 1.44e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu03g01610 ZF-HD_dimer 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01610 - - gmx:100785967 159.844