Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01608 ATGATGGGGAGACCACCTTGCTGTGAGAAAATTGGAGTTAAGAAAGGACCTTGGACTCCAGAAGAAGATATCATTTTGGTCTCTTATATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCAAACAGGACAGGTTTGATGAGATGTAGTAAAAGTTGTAGACTTAGATGGACCAATTATCTTAGACCAGGTATCAAACGAGGTAATTTCAATGATcatgaagaaaaaatgataatcCATCTTCAAGCACTTTTGGGAAATAGATGGGCTGCCATAGCTTCCTATCTTCCACAAAGGACAGACAATGACATAAAAAACTATTGGAATACACATTTGAGGAAAAAGCTAAAAAAGATTCAAATTGAAacaggtaataataataatgaaaaagaagaaaacactTCTCCACAAGTTAAAGGACAATGGGAAAGAAGGCTTCAAACAGATATTCATATGGCAAAACAAGCTTTATGTGAAGCACTTTCACTTAACACTCCAAAACCTATTTTACAAGCTGAGACAAATTCAATAATAGAAAACCAAACATCTCCTTATGCATCAAACACTGAAAACATTGCTAGGTTGCTTGAAAAGTGGATGAAAAAACCCGAAAACTCGGACGAGGTTGTAACCACAGGTTCAAGTTCTAGTGAAGGAGTACAAAAAGGTCAAGGTTTTGATTCTTTGTTGAGTTTTAATTCCTTTAAATCTGATTGTTCTAAATCTGTGTCAGTTGAAGAAAACATCAACTTGACAATGGATTCTTGCCTCTTTCAATTTGAAAGTAAGCCAAACCAAGATTCTCAAGTCCCTTTCATGTTCTTGGAGAAGTGGCTTTTTGATGATGGTGCTACTCAATGCAATGAAGATCTAATCAACATGTCATTGGAGGAAAATGCAACAGGGTTGTTTTAG 918 0.3453 MMGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPNRTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKIQIETGNNNNEKEENTSPQVKGQWERRLQTDIHMAKQALCEALSLNTPKPILQAETNSIIENQTSPYASNTENIARLLEKWMKKPENSDEVVTTGSSSSEGVQKGQGFDSLLSFNSFKSDCSKSVSVEENINLTMDSCLFQFESKPNQDSQVPFMFLEKWLFDDGATQCNEDLINMSLEENATGLF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01608 305 Gene3D - 14 67 - -
Tsu03g01608 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 290 - -
Tsu03g01608 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Tsu03g01608 305 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tsu03g01608 305 SMART sant 14 64 IPR001005 -
Tsu03g01608 305 SMART sant 67 115 IPR001005 -
Tsu03g01608 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Tsu03g01608 305 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tsu03g01608 305 Gene3D - 69 141 - -
Tsu03g01608 305 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 2 290 - -
Tsu03g01608 305 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tsu03g01608 305 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tsu03g01608 305 CDD SANT 70 113 IPR001005 -
Tsu03g01608 305 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu03g01608 305 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01608 Tsu-Chr3 15863169 15865296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01608 2 305 MYB Transcription Factor Family AT5G62470 51.087 1.74e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g01608 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01608 K09422 - pvy:116114586 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01608 03 15863169 15865296 Tsu03g01608 03 15863169 15865296 ECH