Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01602 ATGGTTCACGTCTCGTTTTACCGTAACTAtggtaaaacatttaagaaacCTCGTCGTCCCTACGAAAAGGAACGGTTAGACGCAGAACTGAAACTCGTCGGAGAGTATGGACTAAGGTGTAAACGCGAATTATGGAGAGTACAATATGCTCTGAGTCGAATTCGAAATAATGCTAGAAATCTTCTTACTCTTGATGAGAAAAATCCAAGAAGGATTTTTGAAGGTGAAGCATTGCTTCGAAGAATGTTTCGTTATGGATTACTTGATGAAAATCAGAATAAGCTTGATTATGTTCTTGCTCTTACTGTTGAGAATTTTCTAGAACGTCGTCTTCAAACTCTTGTTTTTAAATCTGGTATGGCTAAGTCCATTCATCATGCTAGGGTTCTCATCAGACAAAAGCATATTAGGGTTGgaagacaagttgtgaacatcCCCTCTTTCTTGGTGAGGGTTGACTCTCAGAAGCATATTGACTTTTCACTTACAAGTCCATTTGGTGGTGGACGTCCTGGAAGAGTGAAGCGAAAGAACGAAAAGGCTGCCACCAAGAAGGCTTCCGGTGGTGACAGCGGTGAGGAAGATGAGGATTAA 594 0.3872 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDENQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPFGGGRPGRVKRKNEKAATKKASGGDSGEEDED 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01602 197 MobiDBLite consensus disorder prediction 164 197 - -
Tsu03g01602 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Tsu03g01602 197 Gene3D - 108 185 IPR036986 GO:0003723
Tsu03g01602 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 197 IPR022801 -
Tsu03g01602 197 MobiDBLite consensus disorder prediction 172 191 - -
Tsu03g01602 197 CDD S4 109 153 - -
Tsu03g01602 197 ProSiteProfiles S4 RNA-binding domain profile. 109 180 - -
Tsu03g01602 197 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 5 197 - -
Tsu03g01602 197 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Tsu03g01602 197 SUPERFAMILY Alpha-L RNA-binding motif 12 160 - -
Tsu03g01602 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Tsu03g01602 197 SMART s4_6 109 180 IPR002942 GO:0003723
Tsu03g01602 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Tsu03g01602 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01602 Tsu-Chr3 15788214 15790486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01602 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 4.74e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01602 K02997 - gmx:100807649 379.407