Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01596 ATGACAAATGGTGGAAACAGACACAACGAACCTGCCAGCTTCTGGACTCAAGCAAACGCGCTTCTTAGGAAGAACTTAACCTTCCAGAAACGAAATGTGAAGACAAACGTTAGGCTGATCTTGTTCCCATTTGTGCTGTGTATATTGCTGCTTCTACTTCAAAATCTGCTCAATAAACAATTTGATAAGGCCAAAAATAAGTGTGGATGCATTTGTACCAAGACACAAGGGGAACAATGCCTGGAGAAAAAATGTGGGGTTCAATATTCGGATTTTGACCAAGTTGGCGCTTGTCCTATTACTAACCCTCCTGAATGGCCTCCATTCTTGCAAACTCCTGATCCACAATACCGTGCTGTTAGAACAGATTTTCTTCCGTTTTCTGATTTTCCAAACCCCTTATGCAGAAACAATGGCTCATGTCCAATCACTATGCTCTTTACTGGCACTAATCAGTCTCTCGGAGAAGTCTTGTCAGGGAATATGATCCCAAGTACTTTTGGTATAAACAACACAGATGTTATGGATAGTTTGGCGACAAATGTCTTGGGATCAGCATCAAAGACAGAAAACACCAATTTTCTGGAGCCTGCTTTCTTTTCAGATCTTCCCATTTACTATCTACAAAGTCAATGCGGAAAGAACTCTACATTCTCCATTCCTATTCAGATATCAACCACTAGCAGGCAGCAAGAGTTAAGATGTGCTCAGGCTTTACGGTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTATATAAAGGTTATAGAAAAGGTAACACGGCGAGGAAGATCAATGAGATTGTTGCAGGTTAtgattttctaaattcaaatgAGAATATATTTAATGTCAGTATATGGTACAACGCAACTTATAAGAATGATACCGGCTTTGATCCTATTGCATTGGCACGGGTTCCTCGTTCAGTTAATTTGGTATCGGATGCCTACCTTCAGTTTCTGTTGGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCACAATTAAGTTTGATTTGGCTTCTCTTTTGGGCGGTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTGTTGTCCTCACATCATTAGTTTATgagaaacaacaaaatttaagaaTCATGATGAAAATGCACGGTCTAGGTGATGGGCCATATTGGATGATTTCTTATGGTTATTTTCTTGCCGTATCAGTTATCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGATTAAAATTCTTCACAATGAATGACTACAGCATCCAATTCGCGTTTTATTTCATCTatataaatttacaaatttCACTGGCATTTTTATTGGCCTCCTTGTTTTCAAATGTCAAGACTGCTACAGTGATTGCATATATAGGTGTTTTTGGAACTGGGCTATTAGCCGgttttcttttccaattttttgtTCAAGATACATCCTTTCCAAATGGGTGGATCATTGTTATGGAGTTATATCCTGGATTTGCTTTATATCGTGGGTTATATGAATTTTCACAAGCTTCTTTTAGTGGAGATACTTTGGGGACTCATGGGATGCGGTGGGGAGATCTCAGTGATAGCACAAATGGGATGAAAGAGGTCTTGATTATCATGTTTTTGGAGTGGCTATTGGTTCTATACTTTGCTTATTACGTCGATCAAGTTTTGTCAACAGGAAGTTGGAAAAGTCCTCTTTTCTTCTTGAAAAGATTTCAGAAAAATCCTAGTTCATCTTTTCGGAAGCCTAGTATCCAAAGAGAAGGATCAAAAGTTTTTGTTACGACTGAGAAACCAGATATTCATCAAGAGATGGAGAAGGTGGAGCAGCTGCTACTTGAACCAACTATGAATCATGCAATTGTTTGTGACAAACTGAGAAAAGTTTATCCAGGGAGGGATGGCAACCCAGAGAAATTTGCGGTGAGAGAGTTGTCGCTTGCTTTGCCTCAAGGAGAATGTTTTGGCATGCTTGGTCCCAACGGTGCTGGGAAGACTTCTTTTATCAACATGATGATAGGTCTTACAAAGCCAACCTCAGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACCAATATGAATGGAATATACACTAGCATGGGTGTATGCCCCCAGCATGACTTGCTGTGGGAAGTCTTGACAGGAAGAGAGCACCTGCTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCTGACTTAACACAAGCAGTGGAAGAATCTTTGAAAAGGGTAAACCTTTTTCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAGaGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCATCAAGAAAGAACTTATGGAATGTTGTTAATCGTGCAAAACAAGACCGTGCAATCATTCTTACTaCACATTCCATGGAAGAGGCAGAAGTACTATGTGATCGATTAGGAATATTTGTAGAAGGTAGCTTTCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGAAGATATGGAGGAACTTATGTGTTCTCAATGGCAACATCTATTGATCATGAAACTGATGTTGAGAAATTAGTGCAACAACTCTCACCAAATGCTAAGAAGATTTACCATATCTCTGGTACTCAAAAGTTTGAGCTACCAAAAGATGAGGTTAGAATATCTAATGTATTCCGAGCTGTTGAAACTGCAAAAGGAAACTTCCCAGTTTCTGCATGGGGTTTAGCTGACACTACATTAGAAGATGTCTTCATTAAGGTTGCTCGTGAGGCTCAGCCATATGATACTTTGTCATAA 2853 0.3877 MTNGGNRHNEPASFWTQANALLRKNLTFQKRNVKTNVRLILFPFVLCILLLLLQNLLNKQFDKAKNKCGCICTKTQGEQCLEKKCGVQYSDFDQVGACPITNPPEWPPFLQTPDPQYRAVRTDFLPFSDFPNPLCRNNGSCPITMLFTGTNQSLGEVLSGNMIPSTFGINNTDVMDSLATNVLGSASKTENTNFLEPAFFSDLPIYYLQSQCGKNSTFSIPIQISTTSRQQELRCAQALRLWRNSSSEVNNELYKGYRKGNTARKINEIVAGYDFLNSNENIFNVSIWYNATYKNDTGFDPIALARVPRSVNLVSDAYLQFLLGPGTKMLFEFVKEMPKPETTIKFDLASLLGGLFFTWVILQLFPVVLTSLVYEKQQNLRIMMKMHGLGDGPYWMISYGYFLAVSVIYMLCFVIFGSVIGLKFFTMNDYSIQFAFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPNGWIIVMELYPGFALYRGLYEFSQASFSGDTLGTHGMRWGDLSDSTNGMKEVLIIMFLEWLLVLYFAYYVDQVLSTGSWKSPLFFLKRFQKNPSSSFRKPSIQREGSKVFVTTEKPDIHQEMEKVEQLLLEPTMNHAIVCDKLRKVYPGRDGNPEKFAVRELSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTNMNGIYTSMGVCPQHDLLWEVLTGREHLLFYGRLKNLKGSDLTQAVEESLKRVNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKNLWNVVNRAKQDRAIILTTHSMEEAEVLCDRLGIFVEGSFQCIGNPKELKGRYGGTYVFSMATSIDHETDVEKLVQQLSPNAKKIYHISGTQKFELPKDEVRISNVFRAVETAKGNFPVSAWGLADTTLEDVFIKVAREAQPYDTLS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01596 950 Pfam ABC transporter 650 794 IPR003439 GO:0005524
Tsu03g01596 950 Gene3D - 619 894 IPR027417 -
Tsu03g01596 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 865 IPR003439 GO:0005524
Tsu03g01596 950 Pfam ABC-2 family transporter protein 348 558 - -
Tsu03g01596 950 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 10 950 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu03g01596 950 SMART AAA_5 658 841 IPR003593 -
Tsu03g01596 950 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 10 950 - -
Tsu03g01596 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 856 IPR027417 -
Tsu03g01596 950 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Tsu03g01596 950 CDD ABC_subfamily_A 632 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01596 Tsu-Chr3 15734496 15742569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01596 538 872 Calmodulin-binding Proteins AT2G36910 22.254 8.37e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01596 - - cam:101495128 1717.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01596 03 15734496 15742569 Tsu03g01596 03 15734496 15742569 ECH