Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01591 ATGTCAAGGAGAGAAACATACTGGTGTCATACATGCAGGCAACCAATCATGCTTGCAGGGAGGGATGCCCTTTGCCCTTACTGCGAAGGAGGATTCGTGCAAGAAATTAACGAGTTGCGAGGACTTGCATCGTCGTCACAGATGGAAGAGTTTCAGGACGATTCTGATATTTTTGACGCTATACATGCTGTTATAAGTCAAAGAGGTTCTGTACCAAGAGTTGGGTTTAGAGAGGCTATTGATAGTTACATGAGGCAAAGAATGGATGGTAGAAGCGCAATCTTTGATGCCAGAAGAAGACCTGTGTCTGGTTCGGTTCCTATTCCTGAACAGACTTGGGGTGTTTTTAGTTCTGCCGGTCGTTACTTAATATTTCATGATGGAACACCTAACTCAAGAGGCAATCCTAGGCGCGTTGATTTTGGCGAATACTTTATGGATCCTGGACTCGATGAACTTATCGAACAACTCAATTCGAACGGTCGTGGTCCAGCTCCGGCCTCACGATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATCTACAATCTGATTCACACTGTCCAATTTGTATAGAAAGATTTGAACTCGGCTCTAAGGCAAGGGAAATGGCATGTAAGCATATTTACCACTCGGACTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCGCCTCATGGGCGTGGTAGTTCTCGTGGAAGGAATGGTAATAGTACTGGTCAAAACAATAATGGCCGAGGAAGGAGAAATCCATGGTCGTTTTTGTGGCCATTTCGTTCTTCTAGTTCAAATACTAATCACTGA 840 0.4417 MSRRETYWCHTCRQPIMLAGRDALCPYCEGGFVQEINELRGLASSSQMEEFQDDSDIFDAIHAVISQRGSVPRVGFREAIDSYMRQRMDGRSAIFDARRRPVSGSVPIPEQTWGVFSSAGRYLIFHDGTPNSRGNPRRVDFGEYFMDPGLDELIEQLNSNGRGPAPASRSSIEAMPTIKITQAHLQSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSSRGRNGNSTGQNNNGRGRRNPWSFLWPFRSSSSNTNH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01591 279 SUPERFAMILY RING/U-box 171 238 - -
Tsu03g01591 279 Pfam Ring finger domain 190 232 IPR001841 -
Tsu03g01591 279 SMART ring_2 191 231 IPR001841 -
Tsu03g01591 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 279 - -
Tsu03g01591 279 PANTHER OS03G0351800 PROTEIN 1 279 - -
Tsu03g01591 279 CDD RING-H2_RNF126_like 191 232 - -
Tsu03g01591 279 MobiDBLite consensus disorder prediction 238 279 - -
Tsu03g01591 279 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Tsu03g01591 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Tsu03g01591 279 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Tsu03g01591 279 MobiDBLite consensus disorder prediction 243 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01591 Tsu-Chr3 15681269 15682375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01591 151 271 C3H Transcription Factor Family AT1G68180 39.669 2.80e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01591 K11982 - cam:101496968 450.669