Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01589 ATGAAAAGACCAAGAAGTTCACCGTCCAGCGACGATGAAGATCATGAAGATGATGATActaagatgatgaagaagcaagaAGTTCTTGTTCAAAAATCACATGAGTGCAATATTTGTGGAAAGACTTTTAACAATGGAAAAGCTTTAGGTGGTCATCGAAGATCTCACTTTATTAAGAAGAAAGGtaatcctcatcatcatcaatcaccAGAGCTGAAAACCCCTAGTAAGAATATTAGGGTTAGTGTTTTCAATGATTATGAAGATGTTTATGgcaaaaagaatcaaattactCTTTGTTATATTTGCAAAAAGAAGTTTCCATCAAAGAATGCTTTGTATGGTCACATGAGATCTCATCCTGATAGGGTTTGTAAAGGAGTCAGTCCTCCTTCAAATTATGATATtcaaaattcttcttcttctcgagatgatgatgatggtgatgatgatgatgacgacggTGGTGGTGATTTTTCTTTGCCTAAATGGAAAAAGAGAGATAAAAGAGGTAGAAAATGTATTGGTAGTGCTGAGGCTGCTATAAACCTAATGTATCTTCGTTCTGATACACACAACTGTGAGGTTTCGGGTTTGAATCCAAAGAGTTCTGAATTTCCACTTCCAATTAAAAAAAGGGATTTTTTTGTTGGTGAGTCATCATCAAATGGGAATGATAAGAAAGAGTTTGTGGTGAACAagattaaatttgtttttagtgGTTCATTGAAGATTGATAACAAAAGTGATTGCAACGGTGACGACGATGATCATGATGAAAGTGACAATATTAGTGATAAGAAACTAAAGACAAGTGAAGATTTATGTGAATCTAGGGTTGATGAGAAACCGAATAATCATTCTGAAGAACAAAAAAGTTTCAACTTTGATTTGAATGAGCCATATGTTATGGAAGACTAA 921 0.2921 MKRPRSSPSSDDEDHEDDDTKMMKKQEVLVQKSHECNICGKTFNNGKALGGHRRSHFIKKKGNPHHHQSPELKTPSKNIRVSVFNDYEDVYGKKNQITLCYICKKKFPSKNALYGHMRSHPDRVCKGVSPPSNYDIQNSSSSRDDDDGDDDDDDGGGDFSLPKWKKRDKRGRKCIGSAEAAINLMYLRSDTHNCEVSGLNPKSSEFPLPIKKRDFFVGESSSNGNDKKEFVVNKIKFVFSGSLKIDNKSDCNGDDDDHDESDNISDKKLKTSEDLCESRVDEKPNNHSEEQKSFNFDLNEPYVMED 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01589 306 MobiDBLite consensus disorder prediction 1 25 - -
Tsu03g01589 306 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Tsu03g01589 306 MobiDBLite consensus disorder prediction 261 294 - -
Tsu03g01589 306 MobiDBLite consensus disorder prediction 57 76 - -
Tsu03g01589 306 Gene3D Classic Zinc Finger 8 123 - -
Tsu03g01589 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Tsu03g01589 306 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 10 171 - -
Tsu03g01589 306 SUPERFAMILY beta-beta-alpha zinc fingers 32 120 IPR036236 -
Tsu03g01589 306 MobiDBLite consensus disorder prediction 249 306 - -
Tsu03g01589 306 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 171 IPR044653 GO:0003700
Tsu03g01589 306 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Tsu03g01589 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Tsu03g01589 306 Pfam C2H2-type zinc finger 34 56 - -
Tsu03g01589 306 Pfam C2H2-type zinc finger 99 122 - -
Tsu03g01589 306 SMART c2h2final6 98 120 IPR013087 -
Tsu03g01589 306 SMART c2h2final6 34 56 IPR013087 -
Tsu03g01589 306 MobiDBLite consensus disorder prediction 124 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01589 Tsu-Chr3 15654374 15655294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01589 31 131 C2H2 Transcription Factor Family AT2G26940 36.036 1.04e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g01589 zf-C2H2_6 2.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01589 - - cam:101497250 250.751