Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01585 ATGGCAGCCATGGGTGAACTCAACGTGGTTGATTCGCCTCCATTTGGGTCCCGGAGTGTTGATTGTTTTGAGAAATTGGAACAAATCGGTCAAGGAACCCATGGTCAGGTTTACATGGCTCGAGAAATCAACACTGGTGAAATTGTTGCTCTCAAGAAAATACGATTGGAAAATAAGAAAGAAGGGTTACCTATGAGTGCTATACGTGaaattaaaattctaaacagaCTACACCATGAAAATGTTATCAAGTTGAAAGAGATTGTGACGTCTCCAGATGACAACAAATATAAAGGGGGCATTTATATGGTTTTTGAATATATGGAACATGATTTAAAAGGACTTGCCAGCCACCCTGGCATGAGATTTACCATCCCCCAGATTAAGTGTTACATGAGGCAGCTTTTGACAGGACTGCACTATTGTCATGTCAATGAAGTTCTTCATCGTGATATCAAAGGCTCAAATGTTCTCATAGATGATGAAGGGAATCTGAAGCTGGCAGATTTTGGATTGGCACGATCATATTCAAATGAGCACAGTGCAAACCTTACAAATCGAGTCATCTCATTATGGTACAGACCCCCTGAATTACTACTGGGGGAAAGAAGGTATGGTCCAGCTGTAGACATATGGTCTGTTGGTTGCATTTTGGCTGAGCTCCTTCACGGGAAGCCCATCTTTCCTGGAAAAGACGAGCCAgagcaaataaataagatttttgaGCTGTGTGGAGCACCCGATGAGGTGAACTGGCCTGGAGTTCAAAACACTCCTTTGTACAATCAGTTTAAGCCAACAAGACCGATGAAAAGGCGTCTAAGGGAAGTTTTCAGACATTTCGATCAACATGCGTTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCTGCTCAGAGAATTCCTGCAAAGGACGCACTTGATGCCGATTACTTCTGGACTTATCCATTACCATCAGCATACCTGTCTTCCCCGATTCAGCAGGGTGGACAACAACATGCCCAAATGCGGCAAGGTCCTGTCCACCCTATTCATGGATTTCAACCAACAGTTGCTTCAGGACATCATTATGGCAAGCCTCAAAGTCCCTCTAGTGGGCCAGGAAGATATCCTCCTGGTGGGAACCCTAGTGGGGGATACAATCATCTAAATCGTGGAGGTCCAGGAGGGGCTGCTGTTTATGGCAGTGGACCATATCCTCCTCAAGTGGGAGGGGCACCTTATGTGTCTAGTGGTATGCCTGCAGGACCCAATGGTGGTCGTTGCAGTGGCTATGGAGTTGGAGCTCAAAATTATCCTCAAGGTGGTCCTCCATACGGTGGATCGGCTGCTGGTCATGGGTCAAACATGATGATAAATTGA 1362 0.4457 MAAMGELNVVDSPPFGSRSVDCFEKLEQIGQGTHGQVYMAREINTGEIVALKKIRLENKKEGLPMSAIREIKILNRLHHENVIKLKEIVTSPDDNKYKGGIYMVFEYMEHDLKGLASHPGMRFTIPQIKCYMRQLLTGLHYCHVNEVLHRDIKGSNVLIDDEGNLKLADFGLARSYSNEHSANLTNRVISLWYRPPELLLGERRYGPAVDIWSVGCILAELLHGKPIFPGKDEPEQINKIFELCGAPDEVNWPGVQNTPLYNQFKPTRPMKRRLREVFRHFDQHALELLEKMLTLDPAQRIPAKDALDADYFWTYPLPSAYLSSPIQQGGQQHAQMRQGPVHPIHGFQPTVASGHHYGKPQSPSSGPGRYPPGGNPSGGYNHLNRGGPGGAAVYGSGPYPPQVGGAPYVSSGMPAGPNGGRCSGYGVGAQNYPQGGPPYGGSAAGHGSNMMIN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01585 453 Gene3D Transferase(Phosphotransferase) domain 1 110 339 - -
Tsu03g01585 453 PANTHER CELL DIVISION PROTEIN KINASE 324 398 - -
Tsu03g01585 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Tsu03g01585 453 PANTHER CELL DIVISION PROTEIN KINASE 8 319 - -
Tsu03g01585 453 Pfam Protein kinase domain 23 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01585 453 SMART serkin_6 23 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01585 453 PANTHER CYCLIN-DEPENDENT KINASE C-2 8 319 - -
Tsu03g01585 453 PANTHER CYCLIN-DEPENDENT KINASE C-2 324 398 - -
Tsu03g01585 453 Gene3D Phosphorylase Kinase; domain 1 11 109 - -
Tsu03g01585 453 ProSiteProfiles Protein kinase domain profile. 23 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01585 453 MobiDBLite consensus disorder prediction 325 395 - -
Tsu03g01585 453 CDD STKc_CDK9_like 23 312 - -
Tsu03g01585 453 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Tsu03g01585 453 SUPERFAMILY Protein kinase-like (PK-like) 18 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01585 Tsu-Chr3 15622302 15626000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01585 1 432 Core Cell Cycle Gene Families AT5G10270 63.804 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu03g01585 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01585 K08819 - gmx:100793565 696.041