Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01584 ATGGGAAGTTCTTGTACAAAACCAGTTGCTCATGTCtcttcatcaaacatttctgGAAGTAAGAAGCCTGAAAGCACAGCAAAGCGGTATTCAAATTCTTCCGAACAAAGAGCTTCTTACCAAAGTTCACAAGAAAATGTGGAAAGTTCAATCTCCAATAAACTTAAGTCCTTCAGCTTGAATGATATGAAGGAGGCTACTAAGAACTTTCGCCGAGAAAATATAATCGGAGAGGGAGGGTTTGGACGTATCTTCAAGGGATGGATTGATGAAAACACATTTGCTCCCACAAAACCAGGGAGTGGAATGGTAGTGGCCATTAAGAACCTCAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTGGCAGAAGTAAATTATCTAGGGCAGCTTCATCATGAAAATCTAGTGAAACTCATCGGTTATTGCTTGCAAGGAAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAAATGTTCAACCTATTCCCTGGCCTACACGTGTCAGCATTGCTGTTGGTATTGCAAAAGGACTAACATTCTTACATTCGTTGAATGCAAATGTTATCTTTCGTGATTTGAAGGCGTCTAATATCCTACTTGATTCGGATTTCAATGCAAAACTTTCAGATTTCGGATTGGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACTAGAATCATCGGAACTCAAGGCTATGCTGCTCCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTTGGCGTTGTCTTGTTGGAATTACTAACAGGAAAGCGTGCAGTAGAAGACGCAAGACCTGGATTTGCTGAAGAAACTCTTGTGGATTGGGCAATGCCTTTCTTGAGTGATAGCAGAAGAGTTTTGAGAATCATGGACACAAGATTAGGTGGTCAATACTCTAAGAAAGGAGTGCAAGCTGCAGCTTCACTTGCATTGCAATGCCTAAACTCAGATCCTAAATTTAGACCACCTATGGCAGAAGTTCTTGTAACATTGGAAGGAATTCAATCGTCAAATTCATTCCAAAGAACACCAAAACATGGAAATGAAAATTCTGCAATCAAACATTCTTCTCATTCCGTAAGGTGA 1146 0.3962 MGSSCTKPVAHVSSSNISGSKKPESTAKRYSNSSEQRASYQSSQENVESSISNKLKSFSLNDMKEATKNFRRENIIGEGGFGRIFKGWIDENTFAPTKPGSGMVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLQGKNRLLVYEFMQKGSLENHLFRKNVQPIPWPTRVSIAVGIAKGLTFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRIIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKRAVEDARPGFAEETLVDWAMPFLSDSRRVLRIMDTRLGGQYSKKGVQAAASLALQCLNSDPKFRPPMAEVLVTLEGIQSSNSFQRTPKHGNENSAIKHSSHSVR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01584 381 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 378 - -
Tsu03g01584 381 SMART serkin_6 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01584 381 PANTHER OS01G0588500 PROTEIN-RELATED 18 378 - -
Tsu03g01584 381 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Tsu03g01584 381 Gene3D Phosphorylase Kinase; domain 1 42 155 - -
Tsu03g01584 381 MobiDBLite consensus disorder prediction 1 46 - -
Tsu03g01584 381 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01584 381 MobiDBLite consensus disorder prediction 358 381 - -
Tsu03g01584 381 Gene3D Transferase(Phosphotransferase) domain 1 156 379 - -
Tsu03g01584 381 CDD STKc_IRAK 76 354 - -
Tsu03g01584 381 SUPERFAMILY Protein kinase-like (PK-like) 44 357 IPR011009 -
Tsu03g01584 381 Pfam Protein tyrosine and serine/threonine kinase 73 349 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01584 Tsu-Chr3 15617887 15621119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01584 41 351 Glycoside Hydrolase AT3G07070 48.418 4.01e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu03g01584 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01584 - - gmx:100800654 631.713